BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_FRASC (50S ribosomal protein L27 OS=Frankia sp. (strain CcI3) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK A S++NGRDS  + LGVK+FGG+ V  G IIVRQRGT FHPGD VG GKD TL+AL  G V+F   +  GR+ V+V
Sbjct:    2 AHKKGASSSRNGRDSNAQRLGVKRFGGQYVKAGEIIVRQRGTHFHPGDLVGRGKDDTLFALSPGHVRFGHRR--GRRVVNV 80          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CORA7 (50S ribosomal protein L27 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK A S+ NGRDS+ K LGVK+FGG++V  G IIVRQRGT+FHPG+ VG G D TL+AL  G V+F   +  GR+ V++ P E
Sbjct:    2 AHKKGASSSSNGRDSESKRLGVKRFGGQQVKAGEIIVRQRGTKFHPGENVGRGGDDTLFALAAGSVEFGVKR--GRRLVNIVPAE 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CLOD6 (50S ribosomal protein L27 OS=Clostridium difficile (strain 630) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 2
Query:   50 LSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            L++  +  A+KK  GS+KNGRDS  K LGVK+F G+ V  G+IIVRQRGT+ HPG  VG G D TL+AL +G VKFE+ K   RK V + P
Sbjct:    2 LNMNLQLLASKKGVGSSKNGRDSISKRLGVKRFDGQLVTAGSIIVRQRGTKIHPGTNVGKGSDDTLFALVDGTVKFER-KDKKRKKVSIYP 91          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BACV8 (50S ribosomal protein L27 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS+KNGR+S  K LGVK FGG+    GNIIVRQRGT FHPG+ +GMG+DHTL+AL +G V F+  + + R+ V V P
Sbjct:    2 AHKKGVGSSKNGRESASKRLGVKIFGGQACKAGNIIVRQRGTEFHPGENIGMGRDHTLFALVDGTVCFKVGR-NDRRSVSVVP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RK27_GRATL (50S ribosomal protein L27, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl27 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHK 289
            A KK +GSTKNGRDS+ + LG+KK+GGE VI GNII+RQRG++F PG  V +GKD TL+AL  G+V F+K K
Sbjct:    2 AHKKGSGSTKNGRDSRSQRLGIKKYGGESVIIGNIIIRQRGSQFKPGVNVKLGKDDTLFALANGKVIFKKKK 73          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_STRGR (50S ribosomal protein L27 OS=Streptomyces griseus GN=rpmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.093e-18
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK A ST+NGRDS  + LGVK+FGG+ V  G I+VRQRGT FHPG  VG G D TL+AL  G V+F  H+  GRK V++ P
Sbjct:    2 AHKKGASSTRNGRDSNAQRLGVKRFGGQAVNAGEILVRQRGTHFHPGTGVGRGGDDTLFALAAGAVQFGTHR--GRKVVNIVP 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_STRGG (50S ribosomal protein L27 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.093e-18
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK A ST+NGRDS  + LGVK+FGG+ V  G I+VRQRGT FHPG  VG G D TL+AL  G V+F  H+  GRK V++ P
Sbjct:    2 AHKKGASSTRNGRDSNAQRLGVKRFGGQAVNAGEILVRQRGTHFHPGTGVGRGGDDTLFALAAGAVQFGTHR--GRKVVNIVP 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SALTO (50S ribosomal protein L27 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rpmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.093e-18
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK A S++NGRDS  + LGVK+FGG+ V  G II+RQRGT+FHPGD VG G D TL+AL  G V+F   +  GRK V + P++
Sbjct:    2 AHKKGASSSRNGRDSAAQRLGVKRFGGQLVSAGEIIIRQRGTKFHPGDLVGRGGDDTLFALAAGSVQFGTKR--GRKTVSIVPQQ 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RUTMC (50S ribosomal protein L27 OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rpmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.093e-18
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST NGRDS  K LGVK+FGG+ V+ GNI+VRQRGT+FHPG  V  GKD TL+A  +G+V F K      ++V +E
Sbjct:    2 AHKKAGGSTNNGRDSVSKRLGVKRFGGQVVLSGNILVRQRGTKFHPGTNVRKGKDDTLFATMDGKVIFAKKGKFMHQYVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_MICAN (50S ribosomal protein L27 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.093e-18
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS+ + LGVK++GG+ V  GNI++RQRGT+ HPG  VG G D TL+AL +G VKFE +K   R+ V V P E
Sbjct:    2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTKVHPGKNVGRGGDDTLFALIDGVVKFE-YKDKSRRQVSVYPAE 85          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_FRASC8.369e-1959.2650S ribosomal protein L27 OS=Frankia sp. (strain C... [more]
RL27_CORA78.369e-1956.4750S ribosomal protein L27 OS=Corynebacterium aurim... [more]
RL27_CLOD68.369e-1954.9550S ribosomal protein L27 OS=Clostridium difficile... [more]
RL27_BACV88.369e-1957.8350S ribosomal protein L27 OS=Bacteroides vulgatus ... [more]
RK27_GRATL8.369e-1962.5050S ribosomal protein L27, chloroplastic OS=Gracil... [more]
RL27_STRGR1.093e-1857.8350S ribosomal protein L27 OS=Streptomyces griseus ... [more]
RL27_STRGG1.093e-1857.8350S ribosomal protein L27 OS=Streptomyces griseus ... [more]
RL27_SALTO1.093e-1855.2950S ribosomal protein L27 OS=Salinispora tropica (... [more]
RL27_RUTMC1.093e-1856.1050S ribosomal protein L27 OS=Ruthia magnifica subs... [more]
RL27_MICAN1.093e-1856.4750S ribosomal protein L27 OS=Microcystis aeruginos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
back to top