BQ623078

Overview
NameBQ623078
Unique NameBQ623078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 112/267 (41.95%), Postives = 150/267 (56.18%), Query Frame = 3
Query:   66 MDFKETELCLGLPGGGNNKK------------DEAAALELTPTPK------------ASNKRGFCET--------------AVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA---------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGN---YGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAL 698
            ++FK TEL LGLP   + ++            DE     L P+              + NKRGF +T                I++ L+ + K+ S  + E   +      N         A KAQVVGWPP+RSYRKN MA + +               FVKV MDGAPYLRKVDL+TY SYQ+LS AL KMFS FT+G    +G+QG  + M+E KL DLL+ S++V TYEDKDGDWMLVGDVPWE+F ++C++++IMKGS+++
Sbjct:   47 LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNN-------APAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGR-ERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSI 305          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.580e-44
Identity = 109/231 (47.19%), Postives = 133/231 (57.58%), Query Frame = 3
Query:   69 DFKETELCLGLPGGGN-NKKDEAAALELTPTPKASNKRGFCETA----VIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA----------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAL 698
            D K TEL LGLPG  + ++   AA L+L P  K + KRGF + A              K       E  ++    +K     P  P+A KAQVVGWPP+RSYRKN MA                    +VKV MDGAPYLRKVDLKTYK+Y++LS AL KMF  FT G  G       ++ES+        +YV TYEDKDGDWMLVGDVPWEMF +SC+R+RIMKGS+A+
Sbjct:   27 DLKGTELRLGLPGSHSPDRSPPAATLDLLPAAKGA-KRGFSDEARPLPASAAAAAAAGKGKKAAAGEEDEDAEEEDKKVAAAPQAPAA-KAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDG-------LSESR-----KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAI 243          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 116/238 (48.74%), Postives = 135/238 (56.72%), Query Frame = 3
Query:   81 TELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPA-----KPSANKAQVVGWPPVRSYRKNAM--------------------------AETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTM-GNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAL 698
            TEL LGLPGGG    + AA        KA+ KRGF ET  IDLKL L +           + P +       + A     KP A KAQ VGWPPVRS+R+N M                          + ++AFVKV MDGAPYLRKVDLK Y SY++LS AL KMF +FT  GN         MNE      +N SD V TYEDKDGDWMLVGDVPW+MFV+SCKR+RIMKGSEA+
Sbjct:   10 TELRLGLPGGGGGAAEAAA--------KAA-KRGFEET--IDLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNN--------MNE------VNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAI 222          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 116/238 (48.74%), Postives = 135/238 (56.72%), Query Frame = 3
Query:   81 TELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPA-----KPSANKAQVVGWPPVRSYRKNAM--------------------------AETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTM-GNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAL 698
            TEL LGLPGGG    + AA        KA+ KRGF ET  IDLKL L +           + P +       + A     KP A KAQ VGWPPVRS+R+N M                          + ++AFVKV MDGAPYLRKVDLK Y SY++LS AL KMF +FT  GN         MNE      +N SD V TYEDKDGDWMLVGDVPW+MFV+SCKR+RIMKGSEA+
Sbjct:   10 TELRLGLPGGGGGAAEAAA--------KAA-KRGFEET--IDLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNN--------MNE------VNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAI 222          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 107/238 (44.96%), Postives = 128/238 (53.78%), Query Frame = 3
Query:   66 MDFKETELCLGLPGGGNNKKDEAA---------ALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPS--ANKAQVVGWPPVRSYRKNAMAETAA----------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAL 698
            +D K TEL LGLPG  +  +  AA          LEL P   A  KR F + A +        K  +    E         +  DK  A P   A KAQVVGWPP+RSYRKN MA                    +VKV MDGAPYLRKVDLKTYK+Y+++S  L KMF  F+ G  G++   D              +YV TYEDKDGDWMLVGDVPWEMF DSC+R+RIMKGS+A+
Sbjct:   32 VDLKGTELRLGLPGSESPDRRPAAIAAAAATATTLELLPAKGA--KRVFPDEAALTPPTAAAGKGKAAREGEEV-----GAEEEDKKVAAPPQPAAKAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAENQKD-------------GEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAI 249          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 102/229 (44.54%), Postives = 130/229 (56.77%), Query Frame = 3
Query:   87 LCLGLPGGGNNKKDEA------AALEL--TPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPA-KPSANKAQVVGWPPVRSYRKNAMAETAA---------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQ--GMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            L LGLPG  +  + EA      AAL L   P P+   KRGF ++  +D     ++  ++ D     +      K   +  A  P A KAQVVGWPPVRSYRKN +A +A                +VKV MDGAPYLRKVDLKTY SY++LS AL KMFS F  G   S      D + +    D L   +YV TYEDKD DWMLVGD+PW++F  SC+++RIM+GS+A
Sbjct:   40 LRLGLPGSESPARAEAEAVVVDAALTLGPAPPPRGGAKRGFVDS--LDRSEGRRAAATAGDDERGVREEEEEEKGLGEAAAGAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDA 266          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.325e-40
Identity = 93/219 (42.47%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   66 MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA-------FVKVCMDGAPYLRKVDLKTYKSYQELSDALA-KMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAL 698
            +DF++T L L LPG  ++    +++   +   +   KR        D +L   + ES                        P + KA+VVGWPPVR++RKNA+A  AA       FVKV +DGAPYLRKVDL+ Y+ Y +L  AL  K FS FT+   G++       E KL+D ++ ++YVPTYEDKDGDWMLVGDVPW+MFV++C+R+R+MK SEA+
Sbjct:   18 LDFEDTALTLRLPGSSSSSSSSSSSSSSSSPSEPDRKRASATDDDPDNRLGSTATES------------------------PPSPKARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNE-------EMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAV 205          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 99/215 (46.05%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   66 MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNH--DKDPAKPSANKAQVVGWPPVRSYRKNAMAET---AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            M+FK TEL LGLPG    +++E   +  +   K +NKR   +T+           E SV +++        N  H  +   A P A KA++VGWPP+RSYRKN++ E      FVKV MDGAPYLRK+DL+ Y  Y EL  AL  MF   T+G Y  +            +    S+Y PTYEDKDGDWMLVGDVPW+MFV SCKR+RIMKG+EA
Sbjct:    1 MEFKATELRLGLPG--ITEEEEKKIIHGSSVVKNNNKRQLPQTS-----------EESVSISK------VTNDEHIVESSSAAPPA-KAKIVGWPPIRSYRKNSLHEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFK-LTIGEYSER------------EGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEA 182          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 94/219 (42.92%), Postives = 125/219 (57.08%), Query Frame = 3
Query:   63 KMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE--------TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            +++ + TEL LGLPG    ++    +  +    ++SNKR   E      K N+ S  S            +   +H++D  +P+  K QVVGWPP+RS+RKN++ +        T  ++KV M GAPYLRK+DLK YKSY EL  AL  +F   T G Y  +            +  N S+Y PTYEDKDGDWMLVGDVPW MFV SCKR+RI+KGSEA
Sbjct:    7 ELNLRATELRLGLPGSDEPQEKRPCSGSVV---RSSNKRSSPELEESRCKSNINSDSSD----------STTTSDHNEDSVQPA--KVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKC-TFGEYSER------------EGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEA 197          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.588e-40
Identity = 98/212 (46.23%), Postives = 123/212 (58.02%), Query Frame = 3
Query:   66 MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALA-KMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAL 698
            +DF++T L L LPG          +L     P    KR               S  SS D  +   N        D  PA     KA+VVGWPPVRS+RKNA+A  A FVKV +DGAPYLRKVDL+ Y  Y +L  AL  K FS FT+  +         +E KL+D +N ++YVPTYEDKDGDWMLVGDVPW+MFV++C+R+R+MK SEA+
Sbjct:   18 LDFEDTALTLRLPG----------SLAAAAAPDPDRKR---------------SSPSSSDAADAADNSSPLAAAADAPPAP----KARVVGWPPVRSFRKNALA--AKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFAD-------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAV 191          
The following BLAST results are available for this feature:
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA8_ARATH3.980e-4541.95Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA17_ORYSJ2.580e-4447.19Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA13_ORYSJ7.506e-4448.74Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI7.506e-4448.74Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA3_ORYSJ2.044e-4144.96Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA19_ORYSJ2.044e-4144.54Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA15_ORYSJ1.325e-4042.47Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA4_PEA5.035e-4046.05Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
AX22E_PHAAU6.575e-4042.92Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
IAA1_ORYSJ8.588e-4046.23Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00169 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00169 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623078 ID=BQ623078; Name=BQ623078; organism=Citrus sinensis; type=EST; length=698bp
TGCCGGAAAAAGAAAATCTGTAAAGGAGTTGTTTGATAATTTGAATGGAA
GCTATTGGCCTGAAAATGGACTTCAAAGAGACTGAACTTTGCCTTGGATT
GCCCGGCGGTGGCAACAACAAAAAAGATGAAGCTGCTGCGTTAGAATTAA
CTCCAACTCCAAAGGCTAGCAACAAAAGAGGCTTCTGTGAGACTGCCGTA
ATTGATTTGAAACTCAATCTTCAGTCTAAGGAATCGTCAGTGGATCTGAA
TGAAAATTTCAAGAATCCTCCTTCCAACAACAAGAATCATGATAAGGATC
CCGCAAAGCCATCCGCCAATAAGGCACAAGTTGTGGGGTGGCCACCAGTG
CGATCCTATAGGAAGAATGCTATGGCTGAAACGGCAGCATTTGTGAAGGT
TTGCATGGACGGGGCTCCATATCTTCGCAAAGTGGATTTGAAGACGTATA
AGAGTTACCAAGAGCTTTCTGATGCATTGGCCAAGATGTTCAGTTCCTTC
ACCATGGGTAATTATGGATCACAAGGAATGATTGATTTTATGAACGAGAG
CAAGTTGATGGATCTTTTAAACAGCTCTGATTATGTGCCAACCTATGAAG
ACAAGGATGGCGACTGGATGCTCGTGGGTGATGTTCCTTGGGAGATGTTT
GTTGATTCATGCAAGCGTATGCGCATAATGAAAGGGTCAGAAGCATTG
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