BQ623078

Overview
NameBQ623078
Unique NameBQ623078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7145 contig Csv1_Contig7145:71..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 61/170 (35.88%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  300 PAKPSANKAQ---------VVGWPPVRSYRKNAMAETAA-----------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSF-------TMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSE 692
            PA P+ N+ Q         VVGWPP+RS+R+N  + +++                        VK+ MDG P  RK+DL  Y SY  LS A+ ++F  F       T      QG  D +   +L+D   S +Y   YED +GD MLVGDVPW++FV + KR+R+++ SE
Sbjct:  157 PATPARNRPQTQGRGAAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFY-QLLD--GSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 65/196 (33.16%), Postives = 93/196 (47.45%), Query Frame = 3
Query:  201 IDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPS--ANKAQVVGWPPVRSYRKNAM-----------------------------AETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMG-NYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSE 692
            + L     S  SS     +   P    +++  + +KPS  A  A VVGWPPVRS+R+N                               AE   FVK+ MDG P  RKVDL  Y  Y +LS A+ K+F       +  + G  D    +   +++   +Y   YED +GD MLVGDVPW+MF+ + KR+R++K S+
Sbjct:   26 LGLPAYFSSSSSSKPSEGSTAAPAFALRSNGTNASKPSGAAAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEAD---AAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD 218          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 63/173 (36.42%), Postives = 88/173 (50.87%), Query Frame = 3
Query:  264 NPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNA-----------------------MAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSF-------TMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSE 692
            +PP +   H  +P    A    VVGWPP+RS+R+N                        + +    VK+ MDG P  RKVDL+ Y SYQ+LS A+ ++F  F       +    G QG  D +  S L+D   +  Y   YED DGD ML GD+PW++FV + KR+R+M+ SE
Sbjct:  147 SPPCSAAAHSSNPQGRGAIPP-VVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDKAKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIF-SGLLD--GTGVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSE 315          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 69/201 (34.33%), Postives = 93/201 (46.27%), Query Frame = 3
Query:  189 ETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAET---------------------AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSF----------TMGNYGSQGMIDFMNESKLMDLLN--SSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSE 692
            E   ++L L L    SS  L  N        K +D    K S   A VVGWPPVRS+R+N  + +                     A FVKV MDG P  RKVDL  +  Y ELS A+ ++F             T     + G      E  +  LL+  S +Y   YED +GD MLVGDVPW MF+ + +R+R+++ S+
Sbjct:   13 EERSLELSLALPGYFSSSGLQGNTSTAADGAKGNDG--FKASRPAAPVVGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSD 211          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 79/245 (32.24%), Postives = 108/245 (44.08%), Query Frame = 3
Query:   63 KMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKN---------------------------AMAETAA-------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSS-DYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSE 692
            K + K+ EL LG PG  ++  DE+    +   PK                      +S + L   + +P S      K  A        VVGWPPVRS+RKN                           A A+T         FVK+ M G P  RKVDL  + SY++LS  + K+F             I+  +E  +  LL+ + +Y  TYED +GD MLVGDVPW+MFV S KR+R++K SE
Sbjct:   36 KTEEKKLELKLGPPGEEDD--DESMIRHMKKEPK---------------------DKSILSLAGKYFSPSSTKTTSHKRTAP-----GPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRDFPSSIE--DEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 58/154 (37.66%), Postives = 78/154 (50.65%), Query Frame = 3
Query:  312 SANKAQVVGWPPVRSYRKN--------------------------------AMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRI 677
            +A+ AQ+VGWPPVR++RKN                                  + +  FVKV ++G    RK+DLK ++SY  LS AL  MF  F      S G+    NE + M+  +   YV  YED +GD MLVGDVPWE+F+ S KR+ I
Sbjct:   87 AASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATRDNELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYI 235          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 59/157 (37.58%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  273 SNNKNHDKDPAKPSANK---AQVVGWPPVRSYRKNAMA-------------ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            S  K+  K+ +  S N+   A VVGWPPVRS R+N  A             E   +VK+ M+G P  RKV+L  Y +YQ+LS A+ ++FS     +   Q                   Y   YED +GD +LVGDVPWEMFV + KR+ ++K S A
Sbjct:   27 SKQKSSTKETSFLSNNRVEVAPVVGWPPVRSSRRNLTAQLKEEMKKKESDEEKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSKKDSWDLNRQ-------------------YTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHA 164          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  321 KAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLM--DLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIM 680
            K  VVGWPPV S R+      A +VKV  +G    RKVDL  + SY EL+  LA+MF +            D   E K+   D  +++  V TYED DGDWMLVGDVPW+ F  S KR++I+
Sbjct:   73 KKTVVGWPPVSSARRACGG--ANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTN-----------DHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA20_ORYSJ (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 61/180 (33.89%), Postives = 79/180 (43.89%), Query Frame = 3
Query:  147 LTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQ-VVGWPPVRS-YRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIM 680
            L   P +  KRGF              +E+      +  N   N +  D D      NK + +VGWPPV+  +R+        +VKV M+G    RK+DL    SY EL D L  MF S               N+    D      Y  TYED +GDWM VGDVPWE F  S KR++I+
Sbjct:   31 LNSAPGSCRKRGF--------------EEALGGFKTDDDNDDGNGRGGDGDSDGEMGNKRRKLVGWPPVKCLHRRRDGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPS--------------TNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 52/168 (30.95%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  216 NLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVV--GWPPVRSYRKNAMA---------ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMF-SSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMK 683
            N  S  SS  ++    +P  ++ N       PS +  +     WPP++S  ++ +          +T+ FVKV M+G P  RK+DL  +  Y+ L + L+ MF +S   GN                   +   +V TYEDKDGDWM+VGD+PW+MF+++ +R++I +
Sbjct:    5 NSCSSFSSSSVDSTKPSPSESSVNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNR------------------DRKHHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
The following BLAST results are available for this feature:
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA6_ORYSJ2.598e-2035.88Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA2_ORYSJ2.598e-2033.16Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA18_ORYSJ2.598e-2036.42Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]
IAA16_ORYSJ5.787e-2034.33Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA18_ARATH7.558e-2032.24Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA25_ORYSJ2.872e-1937.66Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA28_ARATH8.357e-1937.58Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA9_ORYSJ7.822e-1744.26Auxin-responsive protein IAA9 OS=Oryza sativa subs... [more]
IAA20_ORYSJ1.742e-1633.89Auxin-responsive protein IAA20 OS=Oryza sativa sub... [more]
IAA31_ARATH2.972e-1630.95Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00169 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00169 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623078 ID=BQ623078; Name=BQ623078; organism=Citrus sinensis; type=EST; length=698bp
TGCCGGAAAAAGAAAATCTGTAAAGGAGTTGTTTGATAATTTGAATGGAA
GCTATTGGCCTGAAAATGGACTTCAAAGAGACTGAACTTTGCCTTGGATT
GCCCGGCGGTGGCAACAACAAAAAAGATGAAGCTGCTGCGTTAGAATTAA
CTCCAACTCCAAAGGCTAGCAACAAAAGAGGCTTCTGTGAGACTGCCGTA
ATTGATTTGAAACTCAATCTTCAGTCTAAGGAATCGTCAGTGGATCTGAA
TGAAAATTTCAAGAATCCTCCTTCCAACAACAAGAATCATGATAAGGATC
CCGCAAAGCCATCCGCCAATAAGGCACAAGTTGTGGGGTGGCCACCAGTG
CGATCCTATAGGAAGAATGCTATGGCTGAAACGGCAGCATTTGTGAAGGT
TTGCATGGACGGGGCTCCATATCTTCGCAAAGTGGATTTGAAGACGTATA
AGAGTTACCAAGAGCTTTCTGATGCATTGGCCAAGATGTTCAGTTCCTTC
ACCATGGGTAATTATGGATCACAAGGAATGATTGATTTTATGAACGAGAG
CAAGTTGATGGATCTTTTAAACAGCTCTGATTATGTGCCAACCTATGAAG
ACAAGGATGGCGACTGGATGCTCGTGGGTGATGTTCCTTGGGAGATGTTT
GTTGATTCATGCAAGCGTATGCGCATAATGAAAGGGTCAGAAGCATTG
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