BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_THICR (ATP synthase subunit beta OS=Thiomicrospira crunogena (strain XCL-2) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 66/229 (28.82%), Postives = 107/229 (46.72%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLR----EDYLAQNAFTPYD 676
            V+ +  LV    N P   R     TG+T+AEYFRD G ++    D+  R+  A  E+S  L  MP+  GY   L+  +    ER    K       TGS+T + AV  P  D +DP  + T + +     L++ +A+   +P+++ L S S+    L    E +D          +E LQR  +L +I+ ++G D L+E D+  +  A+ ++    + Y     FT  D
Sbjct:  196 VLDKVALVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLSQEMGQIQERITSTK-------TGSITSIQAVYVPADDLTDPAPATTFAHLDATVVLNRSIAETGIYPAIDPLDSTSRQLDPLVVGSEHYD-----TARGVQETLQRYKELKDIIAILGMDELSEEDRSLVARARKMQRFFSQPYFVAKVFTGED 412          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_PELPB (ATP synthase subunit beta OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 69/232 (29.74%), Postives = 110/232 (47.41%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETA----KLLREDYLAQNAFT 667
            V+ +T LV    N P  AR+    TG++IAEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    +R    K        GSVT V A+  P  D +DP  +   + +     L + +A+   +P+V+ L S S+            DP     D  +     +++LQR  DL +I+ ++G D L++ DK+ +  A    + L + +    AFT
Sbjct:  200 VIDKTALVFGQMNEPPGARQRVALTGLSIAEYFRDEEGRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQDRIVSTK-------KGSVTSVQAIYVPADDLTDPAPATAFAHLDATTVLSRSIAELGIYPAVDPLDSTSRI----------LDPNIVGDDHYDTAQAVKQLLQRYKDLQDIIAILGMDELSDEDKLVVSRARKVQRFLSQPFFVAEAFT 414          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_OENOB (ATP synthase subunit beta OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=atpD PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 67/228 (29.39%), Postives = 110/228 (48.25%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            V+K T +V    N P  AR     TG+T+AE FRD  G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GSVT + AV  P  D++DP  + T + +     L++ L Q+  +P+V+ L S S   T      +    D   + T+ +  LQR  +L +I+ ++G D L++ +K  +  A+  R  +     F+  ++F
Sbjct:  202 VLKNTAMVYGQMNEPPGARMRVGLTGLTMAEDFRDQEGKDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAVYVPADDYTDPAPATTFAHLDATTNLERSLTQQGIYPAVDPLESTSSALTP-----DIVGEDHYEVATQVQHFLQRYKELQDIISILGMDELSDEEKTIVNRAR--RIQFFLSQPFSVAEQF 415          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LEIXX (ATP synthase subunit beta OS=Leifsonia xyli subsp. xyli GN=atpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 65/222 (29.28%), Postives = 114/222 (51.35%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V  +T LV    + P   R     + +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R  S+T + A+  P  D++DP  + T + +     L +++A +  +P+V+ L S S+    L+  Y     D   + T  +++LQ+  +L EI+ ++G D L+E DKIT+  A+ +++ +L+QN +
Sbjct:  220 VFDKTALVFGQMDEPPGTRLRVALSALTMAEYFRDVQKQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGLLQERITST-------RGHSITSLQAIYVPADDYTDPAPATTFAHLDATTELSREIASKGLYPAVDPLTSTSRI---LDPRY--LGADHYRVATTVKQILQKNKELQEIIAILGVDELSEEDKITVSRARRIQQ-FLSQNTY 428          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CYTLY (ATP synthase subunit beta OS=Cytophaga lytica GN=atpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 70/225 (31.11%), Postives = 111/225 (49.33%), Query Frame = 2
Query:    2 VMK--RTTLVANTSNMPVAAREASIYTGITIAEYFRD-----MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            VMK  + T V    N P  AR     +G+TIAEYFRD      G +V    D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T + +     L +K+A+   +P+V+ L S S+         E    D  +   + +E+LQR  +L +I+ ++G + L+E DK+ +  A+ ++  +L+Q
Sbjct:  230 VMKDSKATFVFGQMNEPPGARARVALSGLTIAEYFRDGAGEGQGKDVLFFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQERITSTK-------RGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRILAP-----EILGKDHYSCAQRVKELLQRYKELQDIIAILGMEELSEEDKMAVGRARRVQR-FLSQ 441          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CORK4 (ATP synthase subunit beta OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 67/225 (29.78%), Postives = 113/225 (50.22%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY-NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY---STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V++ T LV    + P   R     +G+T+AEYFRD+ + +V +  D+  R+++A  E+S  L  MP+  GY   LA  +    ER    K         S+T + AV  P  D++DP  +   + +     LD+ +A +  +P+VN L S S+        E  Y+        +  +   +LQ+  +L +I+ ++G D L+E DKIT++ A+ + E +L QN F
Sbjct:  213 VLQDTALVFGQMDEPPGVRMRVALSGLTMAEYFRDVQHQDVLLFIDNIFRFSQAGSEVSTLLGRMPSAVGYQPTLADEMGELQERITSTK-------GRSITSLQAVYVPADDYTDPAPATVFAHLDATTELDRSIASKGIYPAVNPLTSTSRILEPGIVGEEHYQ--------VAQRVINILQKNKELQDIIAILGMDELSEEDKITVQRARRI-ERFLGQNFF 421          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CHLCH (ATP synthase subunit beta OS=Chlorobium chlorochromatii (strain CaD3) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 69/232 (29.74%), Postives = 109/232 (46.98%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETA----KLLREDYLAQNAFT 667
            V+ +T LV    N P  AR+    TG++IAEYFRD    +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    +R    K        GSVT V A+  P  D +DP  +   + +     L + +A+   +P+V+ L S S+            DP     D  N     +++LQR  DL +I+ ++G D L++ DK+ +  A    + L + +    AFT
Sbjct:  200 VIDKTALVFGQMNEPPGARQRVALTGLSIAEYFRDEENRDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQDRIVSTK-------KGSVTSVQAIYVPADDLTDPAPATAFTHLDATTVLSRSIAELGIYPAVDPLDSTSRI----------LDPNVVGDDHYNTAQAVKQLLQRYKDLQDIIAILGMDELSDEDKLVVSRARKVQRFLSQPFFVAEAFT 414          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_BRAJA (ATP synthase subunit beta OS=Bradyrhizobium japonicum GN=atpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 65/218 (29.82%), Postives = 110/218 (50.46%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V  +  LV    N P  AR     TG+TIAE FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER           + GS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S S+  + L    E +      +  + ++VLQR   L +I+ ++G D L+E DK+T+  A+ + E +++Q
Sbjct:  211 VKSKCALVFGQMNEPPGARARVALTGLTIAEDFRDKGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------QKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLSRSIAEKGIYPAVDPLDSTSRMLSPLVVGEEHY-----AVARQVQQVLQRYKALQDIIAILGMDELSEEDKLTVARARKV-ERFMSQ 415          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ACIC5 (ATP synthase subunit beta OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            +  L+      P  AR     TG+T+AEYFRD  G +  +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GSVT V AV  P  D +DP  + T + +     L + L++   +P+V+ L S S+  T      E +D     +    + +LQR  DL +I+ ++G D L+E D++T+  A+ +++ +L+Q
Sbjct:  217 KAALIYGQMTEPPGARLRVALTGLTVAEYFRDQEGADTLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLATEMGELQERITSTK-------KGSVTSVQAVYVPADDMTDPAPATTFAHLDATTVLSRPLSELGIYPAVDPLASTSRILTPAVVGQEHYD-----VAQGVKRILQRYKDLQDIIAILGIDELSEEDRLTVSRARKVQK-FLSQ 419          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_THENN (ATP synthase subunit beta OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 68/219 (31.05%), Postives = 109/219 (49.77%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+  T LV    N P  AR     T +TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R GS+T V A+  P  D +DP  + T + +     L +++A+   +P+V+ L S SK         E ++     +    +EVLQR  DL +I+ ++G + L+  DK+ +  A+ ++  +L+Q
Sbjct:  204 VLGNTVLVFGQMNEPPGARFRVALTALTIAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATDMGELQERITST-------RRGSITSVQAIYVPADDITDPAPATTFAHLDATVVLSRRIAELGLYPAVDPLDSSSKILDPAVVGREHYE-----VARGVQEVLQRYKDLQDIIAILGVEELSPEDKLVVHRARRIQR-FLSQ 409          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_THICR2.300e-1928.82ATP synthase subunit beta OS=Thiomicrospira crunog... [more]
ATPB_PELPB2.300e-1929.74ATP synthase subunit beta OS=Pelodictyon phaeoclat... [more]
ATPB_OENOB2.300e-1929.39ATP synthase subunit beta OS=Oenococcus oeni (stra... [more]
ATPB_LEIXX2.300e-1929.28ATP synthase subunit beta OS=Leifsonia xyli subsp.... [more]
ATPB_CYTLY2.300e-1931.11ATP synthase subunit beta OS=Cytophaga lytica GN=a... [more]
ATPB_CORK42.300e-1929.78ATP synthase subunit beta OS=Corynebacterium kropp... [more]
ATPB_CHLCH2.300e-1929.74ATP synthase subunit beta OS=Chlorobium chlorochro... [more]
ATPB_BRAJA2.300e-1929.82ATP synthase subunit beta OS=Bradyrhizobium japoni... [more]
ATPB_ACIC52.300e-1930.56ATP synthase subunit beta OS=Acidobacterium capsul... [more]
ATPB_THENN3.004e-1931.05ATP synthase subunit beta OS=Thermotoga neapolitan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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