BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_FRATM (ATP synthase subunit beta OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 70/223 (31.39%), Postives = 110/223 (49.33%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+           L+S   Q DP     D   I    ++VLQR  +L +I+ ++G D L++ DK  ++ A+ ++  +L+Q
Sbjct:  197 VLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVD----------PLDSTSRQLDPLVVGQDHYEIARAVQKVLQRYKELKDIIAILGMDELSDEDKKIVDRARKIQR-FLSQ 401          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_FRAP2 (ATP synthase subunit beta OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 70/223 (31.39%), Postives = 109/223 (48.88%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +  LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+           L+S   Q DP     D        ++VLQR  +L +I+ ++G D L++ DK T++ A+ ++  +L+Q
Sbjct:  197 VLDKVALVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVD----------PLDSTSRQLDPLVVGHDHYETARAVQKVLQRYKELKDIIAILGMDELSDEDKRTVDRARKIQR-FLSQ 401          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ENTS8 (ATP synthase subunit beta OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CORGL (ATP synthase subunit beta OS=Corynebacterium glutamicum GN=atpD PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 69/225 (30.67%), Postives = 112/225 (49.78%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY---STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V++ T LV    + P   R     +G+T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + AV  P  D++DP  + T + +     LD+ +A +  +P+VN L S S+    +   E  YE        +  +   +LQ+  +L +I+ ++G D L+E DKIT+  A+ + E +L QN F
Sbjct:  218 VLQDTALVFGQMDEPPGVRMRVALSGLTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITSTK-------GRSITSLQAVYVPADDYTDPAPATTFAHLDATTELDRSIASKGIYPAVNPLTSTSRILEPAIVGERHYE--------VSQRVIGILQKNKELQDIIAILGMDELSEEDKITVARARRI-ERFLGQNFF 426          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CORGB (ATP synthase subunit beta OS=Corynebacterium glutamicum (strain R) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 69/225 (30.67%), Postives = 112/225 (49.78%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY---STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V++ T LV    + P   R     +G+T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + AV  P  D++DP  + T + +     LD+ +A +  +P+VN L S S+    +   E  YE        +  +   +LQ+  +L +I+ ++G D L+E DKIT+  A+ + E +L QN F
Sbjct:  218 VLQDTALVFGQMDEPPGVRMRVALSGLTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITSTK-------GRSITSLQAVYVPADDYTDPAPATTFAHLDATTELDRSIASKGIYPAVNPLTSTSRILEPAIVGERHYE--------VSQRVIGILQKNKELQDIIAILGMDELSEEDKITVARARRI-ERFLGQNFF 426          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 68/224 (30.36%), Postives = 113/224 (50.45%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +T LV    N P  AR     TG+T+AE+FRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER           R GS+T V AV  P  D +DP  + T + +     L +++ +   +P+V+ L S S+            DP  +     ++    +EVLQR  +L +I+ ++G D L++ DK+T+  A+ ++  +L+Q
Sbjct:  202 VIDKTALVYGQMNEPPGARMRVGLTGLTMAEHFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST-------RKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIVELGIYPAVDPLDSNSRV----------LDPAIVGDEHYSVARGVQEVLQRYKELQDIIAILGMDELSDEDKLTVSRARKIQR-FLSQ 407          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_AGRT5 (ATP synthase subunit beta OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 65/218 (29.82%), Postives = 106/218 (48.62%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            +  LV    N P  AR     TG+TIAE FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  +    ER             GS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S S+    +    E ++     +  K +  LQR   L +I+ ++G D L+E DK+T+  A+ + E +L+Q  F
Sbjct:  221 KAALVYGQMNEPPGARARVALTGLTIAENFRDEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTT-------NKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMIVGEEHYE-----VARKVQSTLQRYKSLQDIIAILGMDELSEEDKLTVARARKI-ERFLSQPFF 425          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_THESQ (ATP synthase subunit beta OS=Thermotoga sp. (strain RQ2) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/219 (31.05%), Postives = 109/219 (49.77%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+  T LV    N P  AR     T +TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R GS+T V A+  P  D +DP  + T + +     L +++A+   +P+V+ L S SK         E ++     +    +EVLQR  DL +I+ ++G + L+  DK+ +  A+ ++  +L+Q
Sbjct:  204 VLGNTVLVFGQMNEPPGARFRVALTALTIAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATDMGELQERITST-------RRGSITSVQAIYVPADDITDPAPATTFAHLDATVVLSRRIAELGLYPAVDPLDSSSKILDPAIVGREHYE-----VARGVQEVLQRYKDLQDIIAILGVEELSPEDKLVVHRARRIQR-FLSQ 409          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_THEP1 (ATP synthase subunit beta OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/219 (31.05%), Postives = 109/219 (49.77%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+  T LV    N P  AR     T +TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R GS+T V A+  P  D +DP  + T + +     L +++A+   +P+V+ L S SK         E ++     +    +EVLQR  DL +I+ ++G + L+  DK+ +  A+ ++  +L+Q
Sbjct:  204 VLGNTVLVFGQMNEPPGARFRVALTALTIAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATDMGELQERITST-------RRGSITSVQAIYVPADDITDPAPATTFAHLDATVVLSRRIAELGLYPAVDPLDSSSKILDPAIVGREHYE-----VARGVQEVLQRYKDLQDIIAILGVEELSPEDKLVVHRARRIQR-FLSQ 409          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_THEMA (ATP synthase subunit beta OS=Thermotoga maritima GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/219 (31.05%), Postives = 109/219 (49.77%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+  T LV    N P  AR     T +TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R GS+T V A+  P  D +DP  + T + +     L +++A+   +P+V+ L S SK         E ++     +    +EVLQR  DL +I+ ++G + L+  DK+ +  A+ ++  +L+Q
Sbjct:  204 VLGNTVLVFGQMNEPPGARFRVALTALTIAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATDMGELQERITST-------RRGSITSVQAIYVPADDITDPAPATTFAHLDATVVLSRRIAELGLYPAVDPLDSSSKILDPAIVGREHYE-----VARGVQEVLQRYKDLQDIIAILGVEELSPEDKLVVHRARRIQR-FLSQ 409          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_FRATM3.004e-1931.39ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_FRAP23.004e-1931.39ATP synthase subunit beta OS=Francisella philomira... [more]
ATPB_ENTS83.004e-1930.77ATP synthase subunit beta OS=Enterobacter sakazaki... [more]
ATPB_CORGL3.004e-1930.67ATP synthase subunit beta OS=Corynebacterium gluta... [more]
ATPB_CORGB3.004e-1930.67ATP synthase subunit beta OS=Corynebacterium gluta... [more]
ATPB_ALKOO3.004e-1930.36ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_AGRT53.004e-1929.82ATP synthase subunit beta OS=Agrobacterium tumefac... [more]
ATPB_THESQ3.924e-1931.05ATP synthase subunit beta OS=Thermotoga sp. (strai... [more]
ATPB_THEP13.924e-1931.05ATP synthase subunit beta OS=Thermotoga petrophila... [more]
ATPB_THEMA3.924e-1931.05ATP synthase subunit beta OS=Thermotoga maritima G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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