BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALAR (ATP synthase subunit beta OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALA4 (ATP synthase subunit beta OS=Salmonella agona (strain SL483) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_RHILO (ATP synthase subunit beta OS=Rhizobium loti GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 64/218 (29.36%), Postives = 108/218 (49.54%), Query Frame = 2 
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            +  LV    N P  AR     TG+T+AEYFRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  + + + +     L++ +A++  +P+V+ L S S+    +    E +      +  + + +LQR   L +I+ ++G D L+E DK T+  A+ + E +L+Q  F
Sbjct:  214 KAALVYGQMNEPPGARARVGLTGLTVAEYFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------TKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLNRAIAEKGIYPAVDPLDSTSRMLDPMVVGEEHY-----AVARQVQSILQRYKSLQDIIAILGMDELSEEDKQTVARARKI-ERFLSQPFF 418
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_KLEP7 (ATP synthase subunit beta OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_KLEP3 (ATP synthase subunit beta OS=Klebsiella pneumoniae (strain 342) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_HAES2 (ATP synthase subunit beta OS=Haemophilus somnus (strain 2336) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 69/221 (31.22%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L + +A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ + E +L+Q  F
Sbjct:  196 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQGILQRYKELKDIIAILGMDELSEDDKLVVARARKI-ERFLSQPFF 403
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_HAES1 (ATP synthase subunit beta OS=Haemophilus somnus (strain 129Pt) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 69/221 (31.22%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L + +A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ + E +L+Q  F
Sbjct:  196 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQGILQRYKELKDIIAILGMDELSEDDKLVVARARKI-ERFLSQPFF 403
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_HAEIN (ATP synthase subunit beta OS=Haemophilus influenzae GN=atpD PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 69/221 (31.22%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ + E +L+Q  F
Sbjct:  196 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQGILQRYKELKDIIAILGMDELSEEDKLVVARARKI-ERFLSQPFF 403
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_HAEIG (ATP synthase subunit beta OS=Haemophilus influenzae (strain PittGG) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 69/221 (31.22%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ + E +L+Q  F
Sbjct:  196 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQGILQRYKELKDIIAILGMDELSEEDKLVVARARKI-ERFLSQPFF 403
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_HAEIE (ATP synthase subunit beta OS=Haemophilus influenzae (strain PittEE) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 69/221 (31.22%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ + E +L+Q  F
Sbjct:  196 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQGILQRYKELKDIIAILGMDELSEEDKLVVARARKI-ERFLSQPFF 403
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SALAR3.924e-1930.77ATP synthase subunit beta OS=Salmonella arizonae (... [more]
ATPB_SALA43.924e-1930.77ATP synthase subunit beta OS=Salmonella agona (str... [more]
ATPB_RHILO3.924e-1929.36ATP synthase subunit beta OS=Rhizobium loti GN=atp... [more]
ATPB_KLEP73.924e-1930.77ATP synthase subunit beta OS=Klebsiella pneumoniae... [more]
ATPB_KLEP33.924e-1930.77ATP synthase subunit beta OS=Klebsiella pneumoniae... [more]
ATPB_HAES23.924e-1931.22ATP synthase subunit beta OS=Haemophilus somnus (s... [more]
ATPB_HAES13.924e-1931.22ATP synthase subunit beta OS=Haemophilus somnus (s... [more]
ATPB_HAEIN3.924e-1931.22ATP synthase subunit beta OS=Haemophilus influenza... [more]
ATPB_HAEIG3.924e-1931.22ATP synthase subunit beta OS=Haemophilus influenza... [more]
ATPB_HAEIE3.924e-1931.22ATP synthase subunit beta OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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