BQ623088

Overview
NameBQ623088
Unique NameBQ623088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_THEVO (Potassium-transporting ATPase B chain OS=Thermoplasma volcanium GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  301 LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            +I L+D  +PG+ + I+E+K+   ++ +M TGD E +AQ ++   GI+E   + KP DK N V    ++    + MVG+G NDAPALA A VG+ +
Sbjct:  428 VIELQDLIKPGIKERISEIKN-MDIKTVMCTGDDEVTAQYISAQAGIDEYIANSKPVDKYN-VVIREKEGQRMVAMVGDGTNDAPALAKADVGLAM 521          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_MYCTU (Potassium-transporting ATPase B chain OS=Mycobacterium tuberculosis GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  295 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLI-MVGEGINDAPALAAATVGIVL 588
            + ++HL+D  + G+ +   E++    +R +M+TGD+ ++A+ +A   G+++      PEDKL  +K      GG L+ M G+G NDAPALA A VG+ +
Sbjct:  467 IGVVHLKDIVKVGIRERFDEMR-RMSIRTVMITGDNPATAKAIAQEAGVDDFLAEATPEDKLALIK--REQQGGRLVAMTGDGTNDAPALAQADVGVAM 562          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_MYCBO (Potassium-transporting ATPase B chain OS=Mycobacterium bovis GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  295 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLI-MVGEGINDAPALAAATVGIVL 588
            + ++HL+D  + G+ +   E++    +R +M+TGD+ ++A+ +A   G+++      PEDKL  +K      GG L+ M G+G NDAPALA A VG+ +
Sbjct:  467 IGVVHLKDIVKVGIRERFDEMR-RMSIRTVMITGDNPATAKAIAQEAGVDDFLAEATPEDKLALIK--REQQGGRLVAMTGDGTNDAPALAQADVGVAM 562          
The following BLAST results are available for this feature:
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ATKB_THEVO8.435e-1139.58Potassium-transporting ATPase B chain OS=Thermopla... [more]
ATKB_MYCTU8.435e-1135.35Potassium-transporting ATPase B chain OS=Mycobacte... [more]
ATKB_MYCBO8.435e-1135.35Potassium-transporting ATPase B chain OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00179 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00179 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623088 ID=BQ623088; Name=BQ623088; organism=Citrus sinensis; type=EST; length=608bp
GGTACTACCCACCCTATTGGAAGAGCTGTGGTTGACCATAGTATAGGCAA
GGACCTTCCTTCTGTATCAATTGACCGTTTTGAGTATTTTCCTGGTCGAG
GTCTCACAGCAACTGTAAATGGCATTGAGTCAGGAACTGAAGGGGGTAAA
GAATTGAAAGCATCTCTGGGTTCTGTAGATTTTATAACTTCTCTCTGTAA
ATCTGAAGATGAATCAAGAAAGATCAAGGAAGCTGTGAATGCTTCTTCTT
ATGGAAGGGGCTTTGTTCATGCTGCTCTTTCTGTTAATGAAAAGGTAACA
TTGATTCACCTCGAGGATAGGCCTCGCCCAGGAGTTTCAGATGTTATAGC
AGAATTAAAAGATCATGCAAGATTACGTGTGATGATGTTAACTGGTGACC
ATGAGTCTAGTGCGCAGAGAGTAGCAAATGCTGTTGGCATCAATGAAGTT
TACTGCAGCCTGAAGCCTGAGGATAAGCTCAATCATGTGAAGAGTACCTC
CAGGGATATGGGAGGAGGTTTGATCATGGTTGGTGAAGGCATTAATGATG
CGCCAGCACTCGCAGCTGCAACTGTGGGAATTGTTCTTGCTCAACGGGCT
AGTGCAAC
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