BQ623109
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 5.928e-21 Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 301 +DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 64 TDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.321e-20 Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 301 +DE + K+++Y++ + W PCLEF ++ + ++ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 8 TDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.725e-20 Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 301 +DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL ++ K +P +++R++ FD RQVQ F+ +PP Sbjct: 65 TDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 2.253e-20 Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFE-LEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 298 +D+ + K+++Y++R+ W PCLEF ++ +V ++ G Y D RYWTMWKLPM+GC D +QVL E+ K +P +++R++ FD RQVQ F+ +P Sbjct: 57 TDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.253e-20 Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 301 +DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R++ FD RQVQ F+ +PP Sbjct: 65 TDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.253e-20 Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 301 +DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R++ FD RQVQ F+ +PP Sbjct: 64 TDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.157e-16 Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 298 SD+ + ++I Y++R G+IP +EF + YWTMWKLP++ T +VL EV E + EYP+ ++R++GFDN +Q Q +SFI KP Sbjct: 20 SDQQIARQIEYMVREGYIPAVEFNEDSDATTC------------YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.182e-15 Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2 Query: 110 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 301 S Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15 Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 298 +D+ + K++ +L+ G+IP +EFE + E H +WTMWKLP +G A +VL EV E + E P+ ++R+IGFDN +Q Q +SFI KP Sbjct: 20 TDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15 Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 2 Query: 2 SDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 298 SD + +I Y+I G+ P +EF H +P + YWTMWKLP++ C QVL EV E + EY ++R+ GFDN +Q Q +SFI +P Sbjct: 22 SDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108 The following BLAST results are available for this feature:
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623109 ID=BQ623109; Name=BQ623109; organism=Citrus sinensis; type=EST; length=454bpback to top |