BQ623129

Overview
NameBQ623129
Unique NameBQ623129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8578 contig Csv1_Contig8578:57..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.724e-22
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   81 GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 515
            G+ C  P+ + A DF    L  AG+  +++ ++       +FP +N LG+S+AR D+A  G +  H+HP ASE++ V  G + AGF  +    ++ KTL +GD+ IFP+GL+HF +N G   A  F   NS NPG+     A+FA
Sbjct:   46 GFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGK-LFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFA 189          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.252e-22
Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = 3
Query:   39 DFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 437
            DFCVADL+ + + +GYPC   + VT++DF +SGL    NT++    A  PA +  FP +N LG+S+  + +A GG    H+HP  +E  +V+ G +  GF++++  T+Y K +  GD+ + P GL+H++ N G
Sbjct:   42 DFCVADLQATPTNSGYPC--KSQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTN-YTLYSKVIGPGDMFVIPPGLIHYEGNVG 171          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.016e-22
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 3
Query:   99 PAMVTADDFVFSGLGVAGNTTSIINA---AVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQT 548
            P  +T D F F+G     NT+S        VT A +A+FPA+NG  +S A L      V P HTHP ++E+LLVV G ++ GFI ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S  PG+      +F   +   ++ ++
Sbjct:   42 PMNITGDFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGTGIDDAVLAKS 193          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.551e-22
Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = 3
Query:   39 DFCVADLKLSDSPA-----GYPCVPPAMVTADDFVFSGLGVAGNTTSII---NAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALF 512
            D+CVAD   + +       G  C+ PA+  AD F  S L  A N  + +   NA +T    A  P  N  GL++AR+DLA GG+ P H+HP ASE  LV+ G +  GF  +S   +Y + L+ G+  +FP+ ++HF  N   A  A+     NS +PG Q+  F+ F
Sbjct:   29 DYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYR-LYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAF 193          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.460e-21
Identity = 57/152 (37.50%), Postives = 86/152 (56.58%), Query Frame = 3
Query:   99 PAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANNLSSQLVEQT 548
            P+ +    F +  L V GN+       VT A  A+FPA+ G  +S A L    G V P H HP ASE+L+VV G +  G + ++ N TVY +TL+ GD+ +FP+G++HFQ N+G D  A  F +F S  PG      ALF + +   +++++
Sbjct:   42 PSGIDGAFFTYKNL-VTGNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGSGIDDTILDKS 192          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.107e-20
Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = 3
Query:   33 VNDFCVADLKLSDSPA---GYPCVPPAMVTADDFVFSGLGVAGNTTS---IINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALF 512
            + D+CV+    S       G  C  P   +  DF  S L   GNT +   +IN  VT    A  P +N +GL++ARLD    GV+P H HP ASE+ + + G +  GF+ +S   V+ + L  G+  +FP+GL+HF  N      AL     +S NPG QI   + F
Sbjct:   23 LQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTT--ANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGR-VFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSF 186          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.974e-19
Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  108 VTADDFVFSGLGVAGNTTSI--------INAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQT 548
            +T D F F+G     N  S+         N  VT A +A+FPA+NG  +S A L      + P HTHP ++E+LL+V G ++ GF+ ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S   GL      +F  N+   ++ ++
Sbjct:   43 ITGDFFTFTGFR---NPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTNIDDAVLAKS 193          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.788e-11
Identity = 42/131 (32.06%), Postives = 62/131 (47.33%), Query Frame = 3
Query:  120 DFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 512
            DF  S LGV   T               FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +       TL+ G   +FPQG +HF++N   + A+   +FN+ +PG+Q T  + F
Sbjct:   75 DFKNSKLGVTQGT----GGKTVATSRTNFPAVIGHNVAMTVGFIEACGINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11
Identity = 42/131 (32.06%), Postives = 63/131 (48.09%), Query Frame = 3
Query:  120 DFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 512
            DF  S LGV    T              FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +  T     L++G   +FPQG +HF++N   + A+   +FN+ +PG+Q T  + F
Sbjct:   62 DFKNSKLGV----TQSAGGKTVATSRTDFPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFF 188          
The following BLAST results are available for this feature:
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL111_ORYSJ1.724e-2237.93Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GLT3_ARATH2.252e-2238.35Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL92_ORYSJ5.016e-2236.60Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL31_ORYSJ6.551e-2236.53Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ9.460e-2137.50Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH2.107e-2035.33Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL93_ORYSJ3.974e-1934.19Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
SR1A_PHYPO1.788e-1132.06Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO2.335e-1132.06Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00220 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00220 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623129 ID=BQ623129; Name=BQ623129; organism=Citrus sinensis; type=EST; length=553bp
TTGCTTTCGTATCCTCTTCCTCCAATGCTATGGTTAACGACTTCTGCGTC
GCTGACCTAAAGCTGTCGGATAGTCCCGCCGGCTATCCTTGCGTGCCCCC
CGCTATGGTTACCGCTGACGACTTCGTATTTTCGGGCCTCGGCGTGGCCG
GAAACACCACGAGCATTATCAACGCGGCAGTGACACCTGCATTTGTAGCT
CAATTTCCGGCCGTGAATGGGCTCGGACTCTCCTTGGCACGCCTAGATCT
TGCAAAGGGTGGCGTAATCCCAATCCACACTCATCCAGCTGCTTCCGAAA
TCCTTCTTGTTGTGCATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCA
GCTAACACTGTTTACGTAAAGACGCTTAAGAAGGGAGATATCATGATCTT
TCCACAAGGGTTGTTGCATTTTCAAGTAAATTCCGGTGCGGACGGAGCCC
TCGGTTTTGTTAGCTTCAACAGCCCGAATCCTGGACTCCAAATCACCGAT
TTCGCCTTATTTGCTAACAACTTGTCTTCCCAATTGGTGGAGCAGACCAC
TTT
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