BQ623160

Overview
NameBQ623160
Unique NameBQ623160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_SHISS (S-adenosylmethionine synthetase OS=Shigella sonnei (strain Ss046) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  259 GGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_SHIFL (S-adenosylmethionine synthetase OS=Shigella flexneri GN=metK PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  259 GGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_SHIF8 (S-adenosylmethionine synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  259 GGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_SHIDS (S-adenosylmethionine synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  259 GGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_SHIBS (S-adenosylmethionine synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  259 GGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_SHIB3 (S-adenosylmethionine synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  259 GGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPD--FTWEVV 356
            GGGAFSGKDP+KVDRS AY VR  AK+IVA G+A RC VQVSYAIGV EP S+ ++++GT KI + EI+++++  FD RP  +T  L+L +     + +TA++GHFGR   +  FTWE +
Sbjct:  260 GGGAFSGKDPSKVDRSAAYAVRYVAKNIVAAGIADRCEVQVSYAIGVAEPTSISINTFGTNKISNDEIIRLIRTHFDLRPYGITRMLNLLQ---PMYQQTASFGHFGRQGSETAFTWEKI 376          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_PROM2 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9215) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLK----RGGNGRFLKTAAYGHFGRDDPDFTWEVVK 359
            GGGAFSGKDPTKVDRS AY  R  AKSIV   LA++  VQ+SYAIGV +P+S+ VD++ TG I    + +++K+ FD RP  +    DL+    + G   F KTA+YGHFGR D D  WE V+
Sbjct:  277 GGGAFSGKDPTKVDRSAAYAARYVAKSIVKAKLAKKAEVQLSYAIGVAKPISILVDTFDTGVISQANLTELIKKYFDLRPAAIIKEFDLRNLPQKMGGKFFRKTASYGHFGRRDLDLPWEKVE 399          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_LACSS (S-adenosylmethionine synthetase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKD TKVDRS +Y  R  AK+IVA GLAR+C VQ++YAIGV +P+SV V+++ TG + ++ I   ++E+FD RP  +   LDL+R     + +TAAYGHFGR D D +WE
Sbjct:  270 GGGAFSGKDATKVDRSASYAARYIAKNIVAAGLARKCEVQLAYAIGVAQPVSVSVNTFETGTVSEEAIQTAIRENFDLRPAGIIKMLDLQR---PIYKQTAAYGHFGRTDVDLSWE 382          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_KLEP7 (S-adenosylmethionine synthetase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  259 GGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
The following BLAST results are available for this feature:
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHISS2.438e-2856.03S-adenosylmethionine synthetase OS=Shigella sonnei... [more]
METK_SHIFL2.438e-2856.03S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIF82.438e-2856.03S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIDS2.438e-2856.03S-adenosylmethionine synthetase OS=Shigella dysent... [more]
METK_SHIBS2.438e-2856.03S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_SHIB32.438e-2856.03S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_PSYA22.438e-2853.33S-adenosylmethionine synthetase OS=Psychrobacter a... [more]
METK_PROM22.438e-2852.03S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_LACSS2.438e-2854.31S-adenosylmethionine synthetase OS=Lactobacillus s... [more]
METK_KLEP72.438e-2856.03S-adenosylmethionine synthetase OS=Klebsiella pneu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00251 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623160 ID=BQ623160; Name=BQ623160; organism=Citrus sinensis; type=EST; length=590bp
GGGGTGGCGGTGCTTTCTCTGGAAAAGACCCTACTAAGGTGGATAGGAGT
GGTGCATACATTGTTAGGCAGGCTGCTAAGAGCATTGTTGCAAACGGGCT
TGCTCGCAGGTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGC
CATTGTCTGTTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAG
GAGATCCTCAAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGAT
GACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGA
CTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGAA
GTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGA
AAAGTGAAAACTATCCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGA
TGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATC
TCCTGTGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTGT
CTTCTTTTCCCCACTTCTTTTTTGGGTTTGGGTTAAATGT
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