BQ623161

Overview
NameBQ623161
Unique NameBQ623161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1354 contig Csv1_Contig1354:117..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  K A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+L S  ELK I
Sbjct:  210 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEI 338          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_BOVIN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  K A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+L S  ELK I
Sbjct:  210 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEI 338          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_ZYMMO (Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis GN=pdhA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.882e-24
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAE-KARYAARDPITALKKYLIESSLTSEAEL 378
            MAALWKLP++FV+ENN +A+G S  RA +   + ++G  FG+P   VDGMDVL+VR  A  A++  + G+GP ++E +TYR+RGHS++DP   R   E        DP+  LKK L  + +  EAEL
Sbjct:  191 MAALWKLPVIFVIENNGYAMGTSIQRANAHTALSERGAGFGIPALVVDGMDVLEVRGAATVAVDWVQAGKGPIILEMKTYRYRGHSMSDPARYRSREEVNDMKENHDPLDNLKKDLFAAGV-PEAEL 316          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_PIG (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (Fragment) OS=Sus scrofa GN=PDHA1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.683e-24
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP VF+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+L S  ELK I
Sbjct:  209 MAALWKLPCVFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEI 337          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_PONAB (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pongo abelii GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.003e-23
Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+L S  ELK I
Sbjct:  210 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEI 338          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_MACFA (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Macaca fascicularis GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.003e-23
Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+L S  ELK I
Sbjct:  210 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEI 338          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Homo sapiens GN=PDHA1 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.003e-23
Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+L S  ELK I
Sbjct:  210 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEI 338          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPAT_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Mus musculus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 57/132 (43.18%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            M+ALWKLP VF+ ENNL+ +G S+ R+ +    +KKG  F +PG  V+GMD+L VRE  K A +  R G+GP ++E +TYR+ GHS++DP      R+     R +  DPI  L++ +I ++L++  ELK I
Sbjct:  211 MSALWKLPCVFICENNLYGMGTSNERSAASTDYHKKG--FIIPGLRVNGMDILCVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRSREEVHNVR-SKSDPIMLLRERIISNNLSNIEELKEI 339          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_SMIMA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial (Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.711e-23
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMDVL VRE  K A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ ++L S  ELK I
Sbjct:  183 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGIMVDGMDVLCVREATKFAAAYCRSGKGPMLMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNNNLASIEELKEI 311          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPAT_RAT (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Rattus norvegicus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.235e-23
Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            M+ALWKLP VF+ ENN + +G +  R+ +    +KKG  F +PG  V+GMD+L VRE  K A +  R G+GP ++E +TYR+ GHS++DP      R+  +  R +  DPI  L++ +I ++L+S  ELK I
Sbjct:  211 MSALWKLPCVFICENNRYGMGTAIERSAASTDYHKKG--FVIPGLRVNGMDILSVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRTREEVQNVR-SKSDPIMLLRERMISNNLSSVEELKEI 339          
The following BLAST results are available for this feature:
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ODPA_MOUSE4.504e-2445.45Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_BOVIN4.504e-2445.45Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_ZYMMO5.882e-2445.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PIG7.683e-2445.45Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PONAB1.003e-2344.70Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MACFA1.003e-2344.70Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_HUMAN1.003e-2344.70Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_MOUSE1.310e-2343.18Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SMIMA1.711e-2345.45Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_RAT2.235e-2342.42Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00252 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00252 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623161 ID=BQ623161; Name=BQ623161; organism=Citrus sinensis; type=EST; length=390bp
ATGGCTGCATTGTGGAAGTTGCCCATTGTGTTTGTTGTGGAGAACAACTT
GTGGGCTATTGGTATGTCACATCTAAGGGCTACTTCAGATCCTCAGATTT
ATAAAAAGGGACCAGCATTTGGGATGCCAGGTTTTCACGTTGATGGGATG
GATGTTTTGAAGGTGAGGGAAGTGGCTAAAGAGGCAATTGAAAGAGCTAG
GAGAGGTGAAGGACCAACATTGGTGGAATGTGAGACGTACAGGTTTAGAG
GACACTCATTGGCTGACCCTGATGAGCTTCGTGACCCAGCGGAGAAGGCT
CGTTATGCTGCTAGAGATCCAATTACTGCTTTGAAGAAATACTTGATCGA
GAGCAGTCTAACTAGTGAAGCAGAGCTCAAGGCTATTTAA
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