BQ623161

Overview
NameBQ623161
Unique NameBQ623161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1354 contig Csv1_Contig1354:117..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_STAAR (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=pdhA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLTSE 369
            AA +K P +FV++NN +AI     + T+   + +K  A G+PG  VDGMD L V +  KEA +RA  GEGPTL+E  TYR+  H++A  DP   R   E A +  +DP+   +K+L    L +E
Sbjct:  190 AAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNE 313          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_STAAN (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain N315) GN=pdhA PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLTSE 369
            AA +K P +FV++NN +AI     + T+   + +K  A G+PG  VDGMD L V +  KEA +RA  GEGPTL+E  TYR+  H++A  DP   R   E A +  +DP+   +K+L    L +E
Sbjct:  190 AAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNE 313          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_STAAM (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLTSE 369
            AA +K P +FV++NN +AI     + T+   + +K  A G+PG  VDGMD L V +  KEA +RA  GEGPTL+E  TYR+  H++A  DP   R   E A +  +DP+   +K+L    L +E
Sbjct:  190 AAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNE 313          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_STAAC (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain COL) GN=pdhA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLTSE 369
            AA +K P +FV++NN +AI     + T+   + +K  A G+PG  VDGMD L V +  KEA +RA  GEGPTL+E  TYR+  H++A  DP   R   E A +  +DP+   +K+L    L +E
Sbjct:  190 AAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNE 313          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_ACHLA (Pyruvate dehydrogenase E1 component subunit alpha (Fragment) OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.356e-20
Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP--DELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            AA +K P+V V++NN WAI     +A++   + +KG AFG+P   VDG D+L +   +KEA++RAR+G+GPTL+E  TYR   H+ +D      R   E+  +A +D I   K YLI     SE E K +
Sbjct:  162 AASFKAPVVAVIQNNQWAISTPVRKASNSETLAQKGVAFGIPYIQVDGNDMLAMYVASKEAMDRARKGDGPTLIEAFTYRMGPHTTSDDPCSIYRTKEEENEWAKKDQIARFKTYLINKGYWSEEEDKKL 291          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.148e-19
Identity = 52/132 (39.39%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALW LP + V ENN + +G +  RA   P  YK+G    +PG  VDGMDV  V++    A + A +  GP ++E +TYR+ GHS++DP      RD     R   RDP+  ++  ++  ++ +EAELK I
Sbjct:  212 MAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDY--VPGLRVDGMDVFAVKQACTFAKQHALK-NGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVR-QERDPVERIRSLILAHNIATEAELKDI 339          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_SCHPO (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=pda1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.148e-19
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MA LW LP++F  ENN + +G S  R+++  + YK+G    +PG  V+GMDVL V + +K A +       P L+E  TYR+ GHS++DP      R+  +K R AARDPI  LKK+++E  + +  ELK I
Sbjct:  227 MAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQY--IPGLLVNGMDVLAVLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVR-AARDPIEGLKKHIMEWGVANANELKNI 355          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_KLULA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=PDA1 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.148e-19
Identity = 52/131 (39.69%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKA 384
            MA LW LP VF  ENN + +G +  R+++  + +K+G    +PG  V+GMD+L V + +K A +    G GP ++E ETYR+ GHS++DP      RD  +  R +  DPI  LK +L+E  + +E E+KA
Sbjct:  222 MAKLWNLPAVFCCENNKYGMGTAAARSSAMTEYFKRGQY--IPGLKVNGMDILAVYQASKFAKDWTVSGNGPIVLEYETYRYGGHSMSDPGTTYRTRDEIQHMR-SKNDPIAGLKMHLLELGIATEDEIKA 349          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLTSE 369
            A+ +K P +FV++NN +AI     + T+   + +K  + G+PG  VDGMD L V +   EA ERA  GEGPT++E  TYR+  H++A  DP   R   E A +  +DP+   +KYL    L +E
Sbjct:  190 ASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKYLEAKGLWNE 313          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLTSE 369
            A+ +K P +FV++NN +AI     + T+   + +K  + G+PG  VDGMD L V +   EA ERA  GEGPT++E  TYR+  H++A  DP   R   E A +  +DP+   +KYL    L +E
Sbjct:  190 ASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKYLEAKGLWNE 313          
The following BLAST results are available for this feature:
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ODPA_STAAR1.038e-2041.13Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAN1.038e-2041.13Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAM1.038e-2041.13Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAC1.038e-2041.13Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ACHLA1.356e-2040.77Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_SOLTU1.148e-1939.39Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SCHPO1.148e-1941.67Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_KLULA1.148e-1939.69Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_STAES1.958e-1939.52Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAEQ1.958e-1939.52Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00252 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00252 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623161 ID=BQ623161; Name=BQ623161; organism=Citrus sinensis; type=EST; length=390bp
ATGGCTGCATTGTGGAAGTTGCCCATTGTGTTTGTTGTGGAGAACAACTT
GTGGGCTATTGGTATGTCACATCTAAGGGCTACTTCAGATCCTCAGATTT
ATAAAAAGGGACCAGCATTTGGGATGCCAGGTTTTCACGTTGATGGGATG
GATGTTTTGAAGGTGAGGGAAGTGGCTAAAGAGGCAATTGAAAGAGCTAG
GAGAGGTGAAGGACCAACATTGGTGGAATGTGAGACGTACAGGTTTAGAG
GACACTCATTGGCTGACCCTGATGAGCTTCGTGACCCAGCGGAGAAGGCT
CGTTATGCTGCTAGAGATCCAATTACTGCTTTGAAGAAATACTTGATCGA
GAGCAGTCTAACTAGTGAAGCAGAGCTCAAGGCTATTTAA
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