BQ623161

Overview
NameBQ623161
Unique NameBQ623161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1354 contig Csv1_Contig1354:117..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODBA_PSEAE (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 44/129 (34.11%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIY-KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELRDPAEKARYAARDPITALKKYLIESSLTSEAELKA 384
            A +++ P++  V NN WAI      A  +   +  +G   G+    VDG D L V   ++ A ERARR  GP+L+E  TYR   HS + DP + R   +   +   DPI  LK+++I   + SE + +A
Sbjct:  228 AHVYRAPVILNVVNNQWAISTFQAIAGGEGTTFANRGVGCGIASLRVDGNDFLAVYAASEWAAERARRNLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWTNFPLGDPIARLKRHMIGLGIWSEEQHEA 356          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.373e-11
Identity = 42/129 (32.56%), Postives = 58/129 (44.96%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLTSEAELKA 384
            AA  + PI+F   NN +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E  TYR   HS +D        ++  Y  +   PI+ L++YL+      E + KA
Sbjct:  250 AATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKA 378          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.711e-11
Identity = 42/129 (32.56%), Postives = 58/129 (44.96%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLTSEAELKA 384
            AA  + PI+F   NN +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E  TYR   HS +D        ++  Y  +   PI+ L++YL+      E + KA
Sbjct:  249 AATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKA 377          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 42/129 (32.56%), Postives = 57/129 (44.19%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLTSEAELKA 384
            AA  + PI+F   NN +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E  TYR   HS +D        ++  Y  +   PI+ L+ YL+      E + KA
Sbjct:  253 AATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKA 381          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 42/129 (32.56%), Postives = 57/129 (44.19%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLTSEAELKA 384
            AA  + PI+F   NN +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E  TYR   HS +D        ++  Y  +   PI+ L+ YL+      E + KA
Sbjct:  253 AATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKA 381          
The following BLAST results are available for this feature:
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ODBA_PSEAE1.041e-1234.112-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODBA_MOUSE4.373e-1132.562-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT5.711e-1132.562-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA9.741e-1132.562-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN9.741e-1132.562-oxoisovalerate dehydrogenase subunit alpha, mito... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00252 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00252 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623161 ID=BQ623161; Name=BQ623161; organism=Citrus sinensis; type=EST; length=390bp
ATGGCTGCATTGTGGAAGTTGCCCATTGTGTTTGTTGTGGAGAACAACTT
GTGGGCTATTGGTATGTCACATCTAAGGGCTACTTCAGATCCTCAGATTT
ATAAAAAGGGACCAGCATTTGGGATGCCAGGTTTTCACGTTGATGGGATG
GATGTTTTGAAGGTGAGGGAAGTGGCTAAAGAGGCAATTGAAAGAGCTAG
GAGAGGTGAAGGACCAACATTGGTGGAATGTGAGACGTACAGGTTTAGAG
GACACTCATTGGCTGACCCTGATGAGCTTCGTGACCCAGCGGAGAAGGCT
CGTTATGCTGCTAGAGATCCAATTACTGCTTTGAAGAAATACTTGATCGA
GAGCAGTCTAACTAGTGAAGCAGAGCTCAAGGCTATTTAA
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