BQ623180

Overview
NameBQ623180
Unique NameBQ623180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.653e-42
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  183 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.653e-42
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  186 EVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.653e-42
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  185 EVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.996e-42
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  184 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.996e-42
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EV DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  184 EVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.996e-42
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 248
            EV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  180 EVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.305e-41
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  185 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.305e-41
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  185 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.305e-41
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  185 EVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.705e-41
Identity = 77/83 (92.77%), Postives = 83/83 (100.00%), Query Frame = 3
Query:    3 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 251
            EVTDP+YPGG+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  196 EVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
The following BLAST results are available for this feature:
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2A_SOLLC7.653e-4296.39Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB28_PEA7.653e-4295.18Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PETSP7.653e-4296.39Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB25_NICPL9.996e-4295.18Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_PETSP9.996e-4296.39Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_MAIZE9.996e-4296.34Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC1.305e-4195.18Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.305e-4195.18Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL1.305e-4196.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY1.705e-4192.77Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00271 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00271 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623180 ID=BQ623180; Name=BQ623180; organism=Citrus sinensis; type=EST; length=498bp
GTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGAC
CCTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTG
ATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATG
TAATGTACTGCTACTACTAGTTTGAGGGGATTGTATTTTCATTCAATCTC
TTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGA
ATCTAGTTACAAGTTTACATCAACAAAATCTCCAATATGTTCCCTTTT
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