BQ623180

Overview
NameBQ623180
Unique NameBQ623180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   18 LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 209
            LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  216 LYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.975e-15
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 3
Query:   18 LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 209
            LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  213 LYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   21 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 212
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP +N
Sbjct:  185 YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    9 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 203
            TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    9 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 203
            TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.253e-12
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   21 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 212
            YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP +N
Sbjct:  184 YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   18 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 185
            +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F +QA  TGKGP+  LA
Sbjct:  217 IYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
The following BLAST results are available for this feature:
BLAST of BQ623180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB4A_ARATH1.230e-1563.08Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH7.975e-1561.54Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH2.172e-1257.81Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB12_SOLLC6.319e-1256.72Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY6.319e-1256.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA8.253e-1254.69Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB4C_ARATH9.125e-1158.93Chlorophyll a-b binding protein CP29.3, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00271 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00271 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623180 ID=BQ623180; Name=BQ623180; organism=Citrus sinensis; type=EST; length=498bp
GTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGAC
CCTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTG
ATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATG
TAATGTACTGCTACTACTAGTTTGAGGGGATTGTATTTTCATTCAATCTC
TTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGA
ATCTAGTTACAAGTTTACATCAACAAAATCTCCAATATGTTCCCTTTT
back to top