BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 48/154 (31.17%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            + + +  +  +TF   Y  T+  D  S  + ++  TV L LWDTAGQE +  L P   R + V ++ + + +K S+ N   KWI ++R+     V I+LVG K DL D +Q          ++  +GE   K     ++ E S+K   N+KA+F
Sbjct:   19 KTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTI-KWIEDVRNERGNNVVIMLVGNKTDLADKRQ----------VSIEEGEAKAKEYDI-MFTETSAKAGFNIKALF 160          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 47/154 (30.52%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 569
            Y  ++F   +V TV  +F    V      + L +WDTAGQE Y  +    YRGA  FLL + + ++ S+  V + W  +++ Y+     +ILVG K DL D++   A+           G  L   +G   + E S+K   NVK VF+  + ++
Sbjct:   42 YADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE----------DGRRLADDLGFE-FFEASAKENINVKQVFERLVDII 183          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.609e-11
Identity = 49/158 (31.01%), Postives = 68/158 (43.04%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 584
            Y    F  DY  T+  D     + V+   V L LWDTAGQE+++ +    YRGA   +L FS   + S+E ++  W  ++      +P  LV  K+DL DD            I   + E L K +    Y   S K   NV  VF    +  LQ  K
Sbjct:   29 YCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDS----------CIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVFKYLAEKHLQKLK 174          

HSP 2 Score: 25.0238 bits (53), Expect = 1.609e-11
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKTCM 103
            IK V VG+GAVGK+ M
Sbjct:   10 IKMVVVGNGAVGKSSM 25          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RB39A_HUMAN (Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39 PE=2 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.614e-11
Identity = 45/138 (32.61%), Postives = 67/138 (48.55%), Query Frame = 3
Query:  147 PTVFDNFSANV--VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            PTV  +F + +  +  G  + L LWDTAGQE +  +    YR +    L F + ++ S+E+V K W+ E + Y     I+  LVG K DL   +Q          +T  + E+L    G   YIE S+K   NV+  F
Sbjct:   43 PTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHV-KDWLEEAKMYVQPFRIVFLLVGHKCDLASQRQ----------VTREEAEKLSADCGMK-YIETSAKDATNVEESF 168          

HSP 2 Score: 28.8758 bits (63), Expect = 1.614e-11
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFP 133
            + + +GD  VGK+C+ H   Q  FP
Sbjct:   10 RLIVIGDSTVGKSCLLHRFTQGRFP 34          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.619e-11
Identity = 44/161 (27.33%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  102 CVI-SYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            CV+  ++ + F T ++ T+  +F    V + G  + L +WDTAGQE ++ +    YRGA   +L + + +  S+EN++ KW+  +  H    V  +L+G K D+ D +  L           ++GE++ +   A  + E S+K   N++  F    + +LQ
Sbjct:   24 CVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENIS-KWLRNIDEHANEDVERMLLGNKCDMEDKRVVL----------KSKGEQIAR-EHAIRFFETSAKANINIEKAFLTLAEDILQ 172          

HSP 2 Score: 23.483 bits (49), Expect = 1.619e-11
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K + +GD  VGKTC+
Sbjct:   11 KLLLIGDSGVGKTCV 25          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 407
            +T N F  +   T+   F+  ++ VDG  V   +WDTAGQE Y  +    YRGA   LL + +   +++ENV ++W+ ELR H  P + ++LVG K DLR
Sbjct:   34 FTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENV-ERWLKELRDHTDPNIVVMLVGNKSDLR 132          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 48/147 (32.65%), Postives = 73/147 (49.66%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            +T N F  +   T+   F+   +  +G T+   +WDTAGQE Y  +    YRGA   LL + +  +A+Y++V ++WI ELR  A   + I+LVG K DLR  ++   D          +  E  KL     +IE S+    NV+  F
Sbjct:   33 FTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSV-ERWILELRENADRNIEIMLVGNKSDLRHLREVSTDE-------AKEFSEKHKL----TFIETSALDSSNVELAF 167          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP1B_DANRE (Ras-related protein Rap-1b OS=Danio rerio GN=rap1b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 46/171 (26.90%), Postives = 82/171 (47.95%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF-DAAIKVVLQPPKNTKKKKR 605
            A  + +    F   Y PT+ D++   V VDG    L + DTAG E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL D++           +   QG+ L +   +  ++E S+K++ NV  +F D   ++  + P   K +K+
Sbjct:   18 ALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRKTPVTGKPRKK 178          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RABN1_DICDI (Ras-related protein RabN1 OS=Dictyostelium discoideum GN=rabN1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.096e-11
Identity = 49/172 (28.49%), Postives = 76/172 (44.19%), Query Frame = 3
Query:   87 SARLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA---------PGVPIILVGTKLDL-RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            S + A    +    F     P+ FD F   +++D   V    WDTAGQE +  L    YR A+  +L F + ++ S++N+  KWI EL                P +L+GTK D+ R DK    +          +  E +++I    Y E S+K  +N+K  F+   K  L
Sbjct:   19 SGKTAIFNEFAGRKFGIYTCPSTFDLFYKEIMIDDELVGYHFWDTAGQERFTSLNRHFYRNANCCVLCFDIHNEESFKNL-DKWITELHSKCLENGLESEKLSPPFVLIGTKSDIPRTDKSISNERIE----QWCKNIEDQRIIDKVHYFETSAKNSKNIKEPFNIISKFAL 185          

HSP 2 Score: 20.4014 bits (41), Expect = 2.096e-11
Identity = 8/23 (34.78%), Postives = 14/23 (60.87%), Query Frame = 2
Query:   35 EMSASRFIKCVTVGDGAVGKTCM 103
            E  A++ +K + +GD   GKT +
Sbjct:    2 EYKANKKLKIIMIGDYNSGKTAI 24          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.102e-11
Identity = 43/152 (28.29%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  102 CVI-SYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            CV+  ++ + F T ++ T+  +F    V + G  + L +WDTAGQE ++ +    YRGA   +L + + +  S+EN++ KW+  +  H    V  +L+G K D+ DDK+          +   +GE++ +  G   + E S+K   N++  F
Sbjct:   24 CVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENIS-KWLRNIDEHANEDVERMLLGNKCDM-DDKRV---------VPKGKGEQIAREHGIR-FFETSAKANINIEKAF 163          

HSP 2 Score: 23.483 bits (49), Expect = 2.102e-11
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K + +GD  VGKTC+
Sbjct:   11 KLLLIGDSGVGKTCV 25          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6_DICDI1.301e-1131.17Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB3D_MOUSE1.301e-1130.52Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB23_MOUSE1.609e-1131.01Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RB39A_HUMAN1.614e-1132.61Ras-related protein Rab-39A OS=Homo sapiens GN=RAB... [more]
RAB10_DISOM1.619e-1127.33Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RIC2_ORYSJ1.700e-1139.00Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11A_DICDI1.700e-1132.65Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAP1B_DANRE1.700e-1126.90Ras-related protein Rap-1b OS=Danio rerio GN=rap1b... [more]
RABN1_DICDI2.096e-1128.49Ras-related protein RabN1 OS=Dictyostelium discoid... [more]
RAB10_PONAB2.102e-1128.29Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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