BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.102e-11
Identity = 43/152 (28.29%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  102 CVI-SYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            CV+  ++ + F T ++ T+  +F    V + G  + L +WDTAGQE ++ +    YRGA   +L + + +  S+EN++ KW+  +  H    V  +L+G K D+ DDK+          +   +GE++ +  G   + E S+K   N++  F
Sbjct:   24 CVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENIS-KWLRNIDEHANEDVERMLLGNKCDM-DDKRV---------VPKGKGEQIAREHGIR-FFETSAKANINIEKAF 163          

HSP 2 Score: 23.483 bits (49), Expect = 2.102e-11
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K + +GD  VGKTC+
Sbjct:   11 KLLLIGDSGVGKTCV 25          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.102e-11
Identity = 43/152 (28.29%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  102 CVI-SYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            CV+  ++ + F T ++ T+  +F    V + G  + L +WDTAGQE ++ +    YRGA   +L + + +  S+EN++ KW+  +  H    V  +L+G K D+ DDK+          +   +GE++ +  G   + E S+K   N++  F
Sbjct:   24 CVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENIS-KWLRNIDEHANEDVERMLLGNKCDM-DDKRV---------VPKGKGEQIAREHGIR-FFETSAKANINIEKAF 163          

HSP 2 Score: 23.483 bits (49), Expect = 2.102e-11
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K + +GD  VGKTC+
Sbjct:   11 KLLLIGDSGVGKTCV 25          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.102e-11
Identity = 43/152 (28.29%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  102 CVI-SYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            CV+  ++ + F T ++ T+  +F    V + G  + L +WDTAGQE ++ +    YRGA   +L + + +  S+EN++ KW+  +  H    V  +L+G K D+ DDK+          +   +GE++ +  G   + E S+K   N++  F
Sbjct:   24 CVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENIS-KWLRNIDEHANEDVERMLLGNKCDM-DDKRV---------VPKGKGEQIAREHGIR-FFETSAKVNINIEKAF 163          

HSP 2 Score: 23.483 bits (49), Expect = 2.102e-11
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K + +GD  VGKTC+
Sbjct:   11 KLLLIGDSGVGKTCV 25          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 407
            +T N F  +   T+   F+  ++ VDG T+   +WDTAGQE Y  +    YRGA   LL + +    ++ENV ++W+ ELR +A   + I+LVG K DL+
Sbjct:   32 FTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENV-ERWLKELRDHADSNIVIMLVGNKSDLK 130          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 560
            +T N F  +   T+   F+   + +D   +   +WDTAGQE Y  +    YRGA   LL + +    +YENV  +W+ ELR H  P + ++L+G K DLR        H  AV    A+G   R+ +    ++E S+    NV+  F  A+
Sbjct:   33 FTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVT-RWLKELRDHTDPNIVVMLIGNKSDLR--------HLVAVSTDEAKGLAEREGL---YFMETSALEATNVENAFTEAL 171          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPI----TTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            +T N F  D   T+   F+   + +DG  +   +WDTAGQE Y  +    YRGA   L+ + +   +SYEN    W+ ELR  A   V + L+G K DL         H  AVP     T AQ  +L       ++ E S+   +NV   F+  I  + Q
Sbjct:   33 FTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLSELRENADDNVAVGLIGNKSDLA--------HLRAVPTEESKTFAQENQL-------LFTETSALNSENVDKAFEELINTIYQ 176          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 48/154 (31.17%), Postives = 77/154 (50.00%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            + + +  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE +  L P   R + V ++ + + S+ S+ N   KWI E+R      V ++LVG K DL D +Q       ++    A+  EL  +     +IE S+K   N+KA+F
Sbjct:   22 KTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWIDEVRTERGSDVIVVLVGNKTDLVDKRQV------SIEEAEAKARELNVM-----FIETSAKAGFNIKALF 163          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR-------DDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYIECSSKTQQNVKAVFDAAIK 563
            +T N F  +   T+   F+   + V+G TV   +WDTAGQE Y  +    YRGA   LL + +    ++ENV+ +W+ ELR +A   + I+L+G K DL+       +D Q  A+  G   I T+  E L      + I + VY   S K+  + +   +A IK
Sbjct:   32 FTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIK 194          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 2.721e-11
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL-------RDDKQFLADHPGAVPITTAQGE 470
            +T N F  D   T+   F+  ++ ++G T+   +WDTAGQE Y  +    YRGA   LL + +  + S++NV  +W+ ELR +A   + I++VG K DL        D+ + LA+  G   + T+  E
Sbjct:   32 FTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNV-HRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAME 158          

HSP 2 Score: 21.9422 bits (45), Expect = 2.721e-11
Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = 2
Query:   47 SRFIKCVTVGDGAVGKTCMRHFLHQQHF 130
            S   K V +GD  VGK+ +     + HF
Sbjct:   10 SYLFKMVLIGDSGVGKSNILSRFTRNHF 37          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.723e-11
Identity = 42/159 (26.42%), Postives = 77/159 (48.43%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            ++ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+KT  NV+  F    K + Q
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLEARRE----------VKKEEGEAFAREHGL-IFMETSAKTAANVEEAFINTAKEIYQ 169          

HSP 2 Score: 24.2534 bits (51), Expect = 2.723e-11
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            MS +   K + +GD  VGK+C+
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCL 22          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_MOUSE2.102e-1128.29Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN2.102e-1128.29Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA2.102e-1128.29Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
YPTC6_CHLRE2.220e-1138.00Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
YPT3_NICPL2.220e-1131.79Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
YPT31_YEAST2.220e-1131.88GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RBH1B_ARATH2.220e-1131.17Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RAA2A_ARATH2.220e-1132.32Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RGP2_ORYSJ2.721e-1132.81Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RAB2_LYMST2.723e-1126.42Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
back to top