BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RACM_DICDI (Rho-related protein racM OS=Dictyostelium discoideum GN=racM PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-29
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  105 VISYT-SNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKK 602
            +++YT S +FP +YVPT  DNF     ++G   +L +WDTAG E Y+ LRPL Y   D+ LL F++ ++ S+ ++   WI E+  Y PG+PIILVGTK+DLR D   + D    V     +G  L K IGA  + ECSS+    ++ +F   IK+      N    K
Sbjct:   22 LMTYTASGSFPQEYVPTALDNFIHEATINGKKASLSIWDTAGGEYYHELRPLIYPETDILLLLFAIENRESFLHIKTNWITEINQYIPGIPIILVGTKIDLR-DSDLIKDKSNFVKY--KEGLALSKEIGASHFCECSSRMNLGLEELFKKVIKLTNNNNNNNNNNK 185          

HSP 2 Score: 23.8682 bits (50), Expect = 1.942e-29
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKTCM 103
            IK VT+GD  VGKT +
Sbjct:    6 IKIVTIGDYGVGKTTL 21          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND3_RAT (Rho-related GTP-binding protein RhoE OS=Rattus norvegicus GN=Rnd3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.551e-29
Identity = 61/167 (36.53%), Postives = 99/167 (59.28%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSS-KTQQNVKAVFD-AAIKVVLQPPKNTKKKK 602
            +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D   L +  +    P++  QG  + K IGA  YIECS+ +++ +V+ +F  A +  V +  KN K+ K
Sbjct:   43 FAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNKTNKNVKRNK 209          

HSP 2 Score: 27.335 bits (59), Expect = 5.551e-29
Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = 2
Query:   38 MSASRFIKC--VTVGDGAVGKTCMRHFLHQQHFPD 136
            M  ++ +KC  V VGD   GKT + H   +  FP+
Sbjct:   16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPE 50          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND3_PONAB (Rho-related GTP-binding protein RhoE OS=Pongo abelii GN=RND3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.551e-29
Identity = 61/167 (36.53%), Postives = 99/167 (59.28%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSS-KTQQNVKAVFD-AAIKVVLQPPKNTKKKK 602
            +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D   L +  +    P++  QG  + K IGA  YIECS+ +++ +V+ +F  A +  V +  KN K+ K
Sbjct:   43 FAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNKTNKNVKRNK 209          

HSP 2 Score: 27.335 bits (59), Expect = 5.551e-29
Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = 2
Query:   38 MSASRFIKC--VTVGDGAVGKTCMRHFLHQQHFPD 136
            M  ++ +KC  V VGD   GKT + H   +  FP+
Sbjct:   16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPE 50          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND3_MOUSE (Rho-related GTP-binding protein RhoE OS=Mus musculus GN=Rnd3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.551e-29
Identity = 61/167 (36.53%), Postives = 99/167 (59.28%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSS-KTQQNVKAVFD-AAIKVVLQPPKNTKKKK 602
            +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D   L +  +    P++  QG  + K IGA  YIECS+ +++ +V+ +F  A +  V +  KN K+ K
Sbjct:   43 FAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNKTNKNVKRNK 209          

HSP 2 Score: 27.335 bits (59), Expect = 5.551e-29
Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = 2
Query:   38 MSASRFIKC--VTVGDGAVGKTCMRHFLHQQHFPD 136
            M  ++ +KC  V VGD   GKT + H   +  FP+
Sbjct:   16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPE 50          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND3_HUMAN (Rho-related GTP-binding protein RhoE OS=Homo sapiens GN=RND3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.551e-29
Identity = 61/167 (36.53%), Postives = 99/167 (59.28%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSS-KTQQNVKAVFD-AAIKVVLQPPKNTKKKK 602
            +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D   L +  +    P++  QG  + K IGA  YIECS+ +++ +V+ +F  A +  V +  KN K+ K
Sbjct:   43 FAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNKTNKNVKRNK 209          

HSP 2 Score: 27.335 bits (59), Expect = 5.551e-29
Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = 2
Query:   38 MSASRFIKC--VTVGDGAVGKTCMRHFLHQQHFPD 136
            M  ++ +KC  V VGD   GKT + H   +  FP+
Sbjct:   16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPE 50          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO4_ASHGO (GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO4 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 71/187 (37.97%), Postives = 109/187 (58.29%), Query Frame = 3
Query:   87 SARLACVISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL--RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL-----QPPKN-----TKKKKRR 608
            + + + ++SYT   FP DYVPT+F+N+  N+    G  + L LWDTAGQE+Y+RLRPLSY   D+ ++ ++  ++ S  N  + W PE+RH+ P  P++LVG K DL   D    L D   A        E + + +GA V+++CS+KT+Q ++ VF+ AI   L      PP+       KKK++R
Sbjct:   63 TGKTSLLMSYTQGQFPEDYVPTIFENYVTNIEGPRGKVIELALWDTAGQEEYSRLRPLSYGDVDIVMVCYAADNRTSLTNAEELWFPEVRHFCPHAPMMLVGLKSDLYSLDALDRLVDPTDA--------ELVARKMGAFVHLQCSAKTRQCLEDVFNTAIHTALYDELRAPPQRGVKGMFKKKQQR 241          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RACI_DICDI (Rho-related protein racI OS=Dictyostelium discoideum GN=racI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 62/164 (37.80%), Postives = 100/164 (60.98%), Query Frame = 3
Query:   87 SARLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV--PIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 563
            + +   +++Y++ +FPT YVP+  D  S ++  +    ++G WD++   +++  RP +Y   +V +L FS+ S  S+ENV+KKWIPE+R YAP +  PIIL+GTK DLR+D+     L ++    PI+  QG  L K I A +Y+ECSS   Q V  +F   ++
Sbjct:   16 TGKTTMMMTYSTGSFPTGYVPSHVDATSLDIEYNKQVCHVGFWDSSALAEFDNTRPSTYPNTNVIILCFSIDSPTSFENVSKKWIPEIRQYAPSIHTPIILLGTKCDLREDENTINLLKENNQMPPISYKQGLALSKEIKATMYLECSSLCNQGVNEIFKQVVR 179          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO1_ENTHI (Ras-like GTP-binding protein RHO1 OS=Entamoeba histolytica GN=RHO1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.793e-28
Identity = 59/155 (38.06%), Postives = 96/155 (61.94%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 569
            +++++    PT YVPTVF+NFS  +        L LWDTAGQE+Y+RLRPLSY  +DV LL F++ ++ S++N++ KW PE++H    + +IL   K+DLR D   ++D      +T  +G++L + +G   YIE SS  +  +  VF+ ++  +
Sbjct:   37 LLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILDLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH----LYLILQRLKVDLRKD---VSD-----DVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 179          

HSP 2 Score: 30.8018 bits (68), Expect = 7.793e-28
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2
Query:   41 SASRFIKCVTVGDGAVGKTCM 103
            +  + +K V VGDGAVGKTC+
Sbjct:   16 NGKKALKIVVVGDGAVGKTCL 36          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHOH_MOUSE (Rho-related GTP-binding protein RhoH OS=Mus musculus GN=Rhoh PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.295e-27
Identity = 58/170 (34.12%), Postives = 103/170 (60.59%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKK 602
            + + ++ +TS TFP  Y PTV++N   +V +DG  ++LGLWDTAG + +  +RPLSY+ ADV L+ +S+ +  S+ N+  KWI E+R   P  P+++V T+ D R+    +  H  +  I   +G+ L + + A  Y+ECS+ + + V+ VF+ A++  +   +   ++K
Sbjct:   17 KTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWISEIRSNLPCTPVLVVATQTDQRE----VGPHRASC-INAIEGKRLAQDVRAKGYLECSALSNRGVQQVFECAVRTAVNQARRRNRRK 181          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHOH_HUMAN (Rho-related GTP-binding protein RhoH OS=Homo sapiens GN=RHOH PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 56/170 (32.94%), Postives = 104/170 (61.18%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKK 602
            + + ++ +TS TFP  Y PTV++N   +V +DG  ++LGLWDTAG + +  +RPLSY+ ADV L+ +S+ +  S+ N+  KWI E+R   P  P+++V T+ D R+    +  H  +  +   +G++L + + A  Y+ECS+ + + V+ VF+ A++  +   +   +++
Sbjct:   17 KTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEIRSNLPCTPVLVVATQTDQRE----MGPHRASC-VNAMEGKKLAQDVRAKGYLECSALSNRGVQQVFECAVRTAVNQARRRNRRR 181          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACM_DICDI1.942e-2939.52Rho-related protein racM OS=Dictyostelium discoide... [more]
RND3_RAT5.551e-2936.53Rho-related GTP-binding protein RhoE OS=Rattus nor... [more]
RND3_PONAB5.551e-2936.53Rho-related GTP-binding protein RhoE OS=Pongo abel... [more]
RND3_MOUSE5.551e-2936.53Rho-related GTP-binding protein RhoE OS=Mus muscul... [more]
RND3_HUMAN5.551e-2936.53Rho-related GTP-binding protein RhoE OS=Homo sapie... [more]
RHO4_ASHGO1.172e-2837.97GTP-binding protein RHO4 OS=Ashbya gossypii GN=RHO... [more]
RACI_DICDI3.409e-2837.80Rho-related protein racI OS=Dictyostelium discoide... [more]
RHO1_ENTHI7.793e-2838.06Ras-like GTP-binding protein RHO1 OS=Entamoeba his... [more]
RHOH_MOUSE1.295e-2734.12Rho-related GTP-binding protein RhoH OS=Mus muscul... [more]
RHOH_HUMAN2.886e-2732.94Rho-related GTP-binding protein RhoH OS=Homo sapie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
back to top