BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND1_MOUSE (Rho-related GTP-binding protein Rho6 OS=Mus musculus GN=Rnd1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.665e-24
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  129 FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ-NVKAVFDAAIKVVLQ-----PPKN 587
            +P  YVPTVF+N++A +  +   V L LWDT+G   Y+ +RPL Y  +D  LL F +    + ++  KKW  E+  Y P   ++L+G K DLR D   L +  H    PI+  QG  + K +GA +Y+E S+ T + ++ ++F  A  V L      PPK+
Sbjct:   38 YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSETSIHSIFRTASMVCLNKSSPVPPKS 198          

HSP 2 Score: 23.0978 bits (48), Expect = 4.665e-24
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFPD 136
            K V VGD   GKT M   L +  +P+
Sbjct:   15 KLVLVGDVQCGKTAMLQVLAKDCYPE 40          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHBT2_HUMAN (Rho-related BTB domain-containing protein 2 OS=Homo sapiens GN=RHOBTB2 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.850e-19
Identity = 64/177 (36.16%), Postives = 92/177 (51.98%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVF--DNFS--------ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR-DDKQFL--ADHPGAVPI------TTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            AC  + T       +VPTV+  D +         +  VVD  +V+L LWDT G  D+++ R  +Y  +DV +L FS+ +  S  +V   W PE++H+ P  P+ILVG +LDLR  D + +  A  P A PI         +G E+ K +G P Y E S   Q  +K VFD AI+  L
Sbjct:   35 ACNATLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKELGIP-YYETSVVAQFGIKDVFDNAIRAAL 208          

HSP 2 Score: 28.4906 bits (62), Expect = 4.850e-19
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKT 97
            IKCV VGD AVGKT
Sbjct:   15 IKCVVVGDNAVGKT 28          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHBT1_HUMAN (Rho-related BTB domain-containing protein 1 OS=Homo sapiens GN=RHOBTB1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.312e-19
Identity = 64/177 (36.16%), Postives = 92/177 (51.98%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVF--DNFS--------ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR-DDKQFL--ADHPGAVPITTA------QGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            AC  + T       +VPTV+  D +         +  VVD  +V+L LWDT G  D+++ R  +Y  +DV +L FS+ +  S  +V   W PE++H+ P  P+ILVG +LDLR  D + +  A  P A PI         +G E+ K +G P Y E S   Q  +K VFD AI+  L
Sbjct:   35 ACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDEVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKSMWYPEIKHFCPRTPVILVGCQLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKELGLP-YYETSVFDQFGIKDVFDNAIRAAL 208          

HSP 2 Score: 28.4906 bits (62), Expect = 6.312e-19
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKT 97
            IKCV VGD AVGKT
Sbjct:   15 IKCVVVGDNAVGKT 28          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHBT2_MOUSE (Rho-related BTB domain-containing protein 2 OS=Mus musculus GN=Rhobtb2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.201e-19
Identity = 64/177 (36.16%), Postives = 92/177 (51.98%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVF--DNFS--------ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR-DDKQFL--ADHPGAVPI------TTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            AC  + T       +VPTV+  D +         +  VVD  +V+L LWDT G  D+++ R  +Y  +DV +L FS+ +  S  +V   W PE++H+ P  P+ILVG +LDLR  D + +  A  P A PI         +G E+ K +G P Y E S   Q  +K VFD AI+  L
Sbjct:   35 ACNATLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKELGIP-YYETSVFDQFGIKDVFDNAIRAAL 208          

HSP 2 Score: 28.4906 bits (62), Expect = 8.201e-19
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKT 97
            IKCV VGD AVGKT
Sbjct:   15 IKCVVVGDNAVGKT 28          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHBT1_MOUSE (Rho-related BTB domain-containing protein 1 OS=Mus musculus GN=Rhobtb1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.133e-17
Identity = 61/177 (34.46%), Postives = 91/177 (51.41%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVF--DNFS--------ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR-DDKQFL--ADHPGAVPITTA------QGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            AC  + T       +VPTV+  D +         +  VVD  +++L LWDT G  D+++ R  +Y  +DV +L FS+ +  S  +V   W  E++H+ P  P++LVG +LDLR  D + +  A  P A PI         +G E+ K +G P Y E S   Q  +K VFD AI+  L
Sbjct:   35 ACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDEVSISLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKTMWYQEIKHFCPRTPVVLVGCQLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKELGIP-YYETSVFDQFGIKDVFDNAIRAAL 208          

HSP 2 Score: 28.4906 bits (62), Expect = 1.133e-17
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKT 97
            IKCV VGD AVGKT
Sbjct:   15 IKCVVVGDNAVGKT 28          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.536e-17
Identity = 54/170 (31.76%), Postives = 90/170 (52.94%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKKR 605
            A  I    N F  +Y PT+ D++   V +D  T  L + DTAGQE+Y+ +R    R    FL  +S+ S++S++ +A      LR      VP+I+VG K DL  D+Q          +TT +G++L K  G+P ++E S+K + NV+  F + ++ + +  K   K ++
Sbjct:   18 ALTIQLIQNHFIDEYDPTIEDSYRKQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDRVPMIVVGNKCDLESDRQ----------VTTGEGQDLAKSFGSP-FLETSAKIRVNVEEAFYSLVREIRKDLKGDSKPEK 176          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.236e-16
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            ++ +T + F + ++ T+  +F    V VDG  V L +WDTAGQE +  +    YRGA   +L + +  +AS+ NV + W+  + +H +  V  ILVG KLDL +DK+          ++ A+G+ L    G   Y E S+K   +V+  F A  K VL
Sbjct:   30 LLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNV-RNWMRNIEQHASDNVNKILVGNKLDLAEDKRV---------VSIARGQALADEFGFRFY-ETSAKDNVHVEEAFIAVAKDVL 176          

HSP 2 Score: 24.2534 bits (51), Expect = 1.236e-16
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKTCM 103
            IK + VGD  VGK+C+
Sbjct:   14 IKLLLVGDSGVGKSCL 29          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.089e-16
Identity = 52/156 (33.33%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            +T N F + ++ T+  +F    + VDG  V + +WDTAGQE Y  +    YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q          +   QG++L K  G   Y E S+ T  N+K  F    ++VLQ
Sbjct:   28 FTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGREQGQQLAKEYGMDFY-ETSACTNLNIKESFTRLTELVLQ 171          

HSP 2 Score: 22.7126 bits (47), Expect = 2.089e-16
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            + + +GD  VGKTC+
Sbjct:   10 RLLLIGDSGVGKTCL 24          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.089e-16
Identity = 52/156 (33.33%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            +T N F + ++ T+  +F    + VDG  V + +WDTAGQE Y  +    YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q          +   QG++L K  G   Y E S+ T  N+K  F    ++VLQ
Sbjct:   28 FTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGREQGQQLAKEYGMDFY-ETSACTNLNIKESFTRLTELVLQ 171          

HSP 2 Score: 22.7126 bits (47), Expect = 2.089e-16
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            + + +GD  VGKTC+
Sbjct:   10 RLLLIGDSGVGKTCL 24          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.089e-16
Identity = 52/156 (33.33%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            +T N F + ++ T+  +F    + VDG  V + +WDTAGQE Y  +    YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q          +   QG++L K  G   Y E S+ T  N+K  F    ++VLQ
Sbjct:   28 FTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGREQGQQLAKEYGMDFY-ETSACTNLNIKESFTRLTELVLQ 171          

HSP 2 Score: 22.7126 bits (47), Expect = 2.089e-16
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            + + +GD  VGKTC+
Sbjct:   10 RLLLIGDSGVGKTCL 24          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RND1_MOUSE4.665e-2436.02Rho-related GTP-binding protein Rho6 OS=Mus muscul... [more]
RHBT2_HUMAN4.850e-1936.16Rho-related BTB domain-containing protein 2 OS=Hom... [more]
RHBT1_HUMAN6.312e-1936.16Rho-related BTB domain-containing protein 1 OS=Hom... [more]
RHBT2_MOUSE8.201e-1936.16Rho-related BTB domain-containing protein 2 OS=Mus... [more]
RHBT1_MOUSE1.133e-1734.46Rho-related BTB domain-containing protein 1 OS=Mus... [more]
RASG_DICDI3.536e-1731.76Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
YPTV2_VOLCA1.236e-1633.54GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB15_RAT2.089e-1633.33Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_MOUSE2.089e-1633.33Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB15_HUMAN2.089e-1633.33Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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