BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.312e-15
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            Y +N F +    T+   F + ++ VDG  V L +WDTAGQE +  LR   YRGAD  LL FS+  + S+EN+   W  E  +YA        P +++G K+D ++D+Q          +TT + +      G   Y+E S+K   NV   F+ A++ VL
Sbjct:   27 YVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPDHFPFVVLGNKVD-KEDRQ----------VTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQVL 173          

HSP 2 Score: 22.3274 bits (46), Expect = 1.312e-15
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 2
Query:   47 SRFIKCVTVGDGAVGKTCM 103
            S  +K + +GDG VGK+ +
Sbjct:    5 SLLLKVILLGDGGVGKSSL 23          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.312e-15
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            Y +N F +    T+   F + ++ VDG  V L +WDTAGQE +  LR   YRGAD  LL FS+  + S+EN+   W  E  +YA        P +++G K+D ++D+Q          +TT + +      G   Y+E S+K   NV   F+ A++ VL
Sbjct:   27 YVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLGNKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173          

HSP 2 Score: 22.3274 bits (46), Expect = 1.312e-15
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 2
Query:   47 SRFIKCVTVGDGAVGKTCM 103
            S  +K + +GDG VGK+ +
Sbjct:    5 SLLLKVILLGDGGVGKSSL 23          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 55/172 (31.98%), Postives = 87/172 (50.58%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKKRR 608
            A  I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  + FLL F++ S  S+E++   ++ I  ++  A  VP++LVG K DL               +   Q  E+ K  G P YIE S+KT+  V   F   ++ + +   N  ++ R+
Sbjct:   18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKD-AEEVPMVLVGNKCDLT-----------TWNVKNEQAREVAKQYGIP-YIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRK 176          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 55/172 (31.98%), Postives = 87/172 (50.58%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKKRR 608
            A  I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  + FLL F++ S  S+E++   ++ I  ++  A  VP++LVG K DL               +   Q  E+ K  G P YIE S+KT+  V   F   ++ + +   N  ++ R+
Sbjct:   18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKD-AEEVPMVLVGNKCDLT-----------TWNVKNEQAREVAKQYGIP-YIETSAKTRMGVDDAFYTLVREIRKDKDNKGRRGRK 176          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.702e-15
Identity = 49/150 (32.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            ++ ++  +F T ++ T+  +F    + +DG  + L +WDTAGQE +  +    YRGA   LL + +  ++S+ N+ + WI  + +H +  V  ILVG K D+ + K+       AVP  TA+G+ L    G   + E S+KT  NV+ VF
Sbjct:   32 LLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKR-------AVP--TAKGQALADEYGIK-FFETSAKTNLNVEEVF 170          

HSP 2 Score: 23.8682 bits (50), Expect = 1.702e-15
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKTCM 103
            IK + +GD  VGK+C+
Sbjct:   16 IKLLLIGDSGVGKSCL 31          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.940e-15
Identity = 53/161 (32.92%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            A  I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A  + T Q ++L +  G P YIE S+KT+Q V+  F   ++ + Q
Sbjct:   18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------PARTVETRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.534e-15
Identity = 51/167 (30.54%), Postives = 87/167 (52.10%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKK 596
            A  I    N F  +Y PT+ D++   V +D  T  L + DTAGQE+Y+ +R    R    FL  +S+ S++S++ +A      LR      VP+I+VG K DL  ++Q          +TT +G++L +  G P ++E S+K++ NV+  F   ++ + +  +   K
Sbjct:   18 ALTIQLIQNHFIDEYDPTIEDSYRKQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQ----------VTTGEGQDLARSFGCP-FMETSAKSRVNVEESFYQLVREIRKDSRTDTK 173          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RALBB_XENLA (Ras-related protein ralB-B OS=Xenopus laevis GN=ralb-B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.534e-15
Identity = 54/170 (31.76%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKK 602
            A  + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY  +R   +R  + FLL FS+    S+   A  ++ I  ++     +P+++VG K DL D +Q        VP+  A+G+          Y+E S+KT+ NV  VF   ++ V     +  K K
Sbjct:   29 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEDRRQ--------VPMDEARGKAEE---WGVQYVETSAKTRANVDKVFFDLMREVRTKKMSENKDK 187          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.534e-15
Identity = 53/170 (31.18%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKK 602
            A  + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY  +R   +R  + FLL FS+    S+   A  ++ I  ++     +P+++VG K DL D +Q        VP+  A+G+          Y+E S+KT+ NV  VF   ++ +     +  K K
Sbjct:   29 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQ--------VPMDEARGKAEE---WGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENKDK 187          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RRAS2_MOUSE (Ras-related protein R-Ras2 OS=Mus musculus GN=Rras2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.309e-15
Identity = 53/177 (29.94%), Postives = 88/177 (49.72%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ--------PPKNTKKKK 602
            A  I +  + F TDY PT+ D+++   V+D     L + DTAGQE++  +R    R  + FLL FS+  + S+E + K     LR       P+IL+G K DL   +Q          +T  +G++L + +    Y+E S+K + NV   F   ++V+ +         P+ T+K+K
Sbjct:   29 ALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ----------VTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVRVIRKFQEQECPPSPEPTRKEK 194          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB9B_MOUSE1.312e-1533.96Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_HUMAN1.312e-1533.96Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAS1_DROPS1.486e-1531.98Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE1.486e-1531.98Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
ARA3_ARATH1.702e-1532.67Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RASH_CHICK1.940e-1532.92GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]
RAS1_PHYPO2.534e-1530.54Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RALBB_XENLA2.534e-1531.76Ras-related protein ralB-B OS=Xenopus laevis GN=ra... [more]
RALBA_XENLA2.534e-1531.18Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]
RRAS2_MOUSE3.309e-1529.94Ras-related protein R-Ras2 OS=Mus musculus GN=Rras... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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