BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 41/154 (26.62%), Postives = 81/154 (52.60%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 551
            + +  I + SN F   Y PT+ D +    ++D     L + DTAGQ++ N +R    +  + F+L +S+ S++S++ + + ++ +++   +  VPII++  K DL D++Q          +T  +GE      G   ++E S+K + N+  VF+
Sbjct:   27 KTSITIQFISNHFVNCYDPTIEDLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQI-QSFLDQIKFLKSEKVPIIMIANKSDLDDERQ----------VTYQEGENFANRFGMS-FMEVSAKYKLNIDEVFN 168          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 51/178 (28.65%), Postives = 84/178 (47.19%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA---------PG------------VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 563
            + A  I      F   Y PT+ D++   VV+DG    L + DTAGQE+Y  LR    R  + F+L +S+ S++S+  + KK+  +++            PG            VPI+LVG K D   +++          ++T +G  L + +G   + E S+KT+ NV+  F   +K
Sbjct:   21 KTALTIQLCLEHFVETYDPTIEDSYRKQVVIDGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARI-KKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTERE----------VSTQEGHALARELGCE-FTEASAKTRTNVEKAFYDVVK 186          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  174 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA-AIKVVLQPPKNT 590
            +V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ ++   AK W+ EL R  +P + I L G K DL   +    +   A     A    L       +++E S+KT  NV  +F A A K+    P++T
Sbjct:   61 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAY----ADDNSL-------LFMETSAKTAMNVNDLFLAIAKKLPKSEPQST 189          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 48/169 (28.40%), Postives = 91/169 (53.85%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPG-VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNT 590
            + +  + Y    F ++ +PTV   F   V+ +  S++ L +WDTAGQE Y  +  L +RGA+  LL + +  K S+   A++W+ +L + + PG V ++LVG K DL ++++          +T  +G+E  +   + +++E S+K    V  +F+   + +LQ   +T
Sbjct:   32 KTSLALRYMKQDF-SNVLPTVGCAFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHK-AQQWLEDLEKEFQPGEVVVMLVGNKTDLGEERE----------VTFQEGKEFAE-SKSLLFMETSAKLNYQVSEIFNTVAQELLQRAGDT 187          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.577e-11
Identity = 48/170 (28.24%), Postives = 83/170 (48.82%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ--PPKNT 590
            + + V+ Y+ N F   +  T+  +F    + + G  + L +WDTAGQE Y+ L P+ YR +   ++ + +  + S+   A+ WI EL R     V + +VG K+DL  D+Q       A+        E  + +GA  Y   S+K  + V  +F    K +L+  PP ++
Sbjct:   29 KTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHK-ARNWIKELKRMLGDKVTLCIVGNKIDL--DRQRTVSEKDAL--------EYAESVGAKHYY-TSAKQSKGVAELFLDLAKRILEANPPSSS 186          

HSP 2 Score: 23.483 bits (49), Expect = 4.577e-11
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 2
Query:   32 REMSASRFIKCVTVGDGAVGKTCM 103
            R   A+   K V +G+GAVGKT +
Sbjct:    9 RRRQATVKAKVVLLGEGAVGKTSL 32          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 45/158 (28.48%), Postives = 76/158 (48.10%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 569
            A  I +  + F  +Y PT+ D++    ++D     L + DTAGQE+Y  +R    R  + FLL +S+ S+ S+E ++      LR       P+I+V  K DL  ++Q          +   +G +L K  G   +IE S+K + NV   F   ++ +
Sbjct:   25 ALTIQFIQSHFVDEYDPTIEDSYRKQCIIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKDQDSFPVIVVANKCDLEYERQ----------VGMNEGRDLAKHFGCK-FIETSAKQRINVDEAFSNLVREI 171          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 581
            ++ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     I+  LVG K+D  + +           +   +G +  +   + ++IE S+KT   V+  F+  ++ ++Q P
Sbjct:   25 LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQTP 173          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 581
            ++ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     I+  LVG K+D  + +           +   +G +  +   + ++IE S+KT   V+  F+  ++ ++Q P
Sbjct:   25 LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQTP 173          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 581
            ++ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     I+  LVG K+D  + +           +   +G +  +   + ++IE S+KT   V+  F+  ++ ++Q P
Sbjct:   25 LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQTP 173          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 581
            ++ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     I+  LVG K+D  + +           +   +G +  +   + ++IE S+KT   V+  F+  ++ ++Q P
Sbjct:   25 LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQTP 173          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASU_DICDI3.787e-1126.62Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RAS2_NEUCR3.787e-1128.65Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RAB5B_CHICK3.787e-1132.62Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB17_MOUSE3.787e-1128.40Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]
RAB21_GEOCY4.577e-1128.24Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RASL_COPCI4.945e-1128.4824 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]
RAB18_RAT4.945e-1126.54Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB4.945e-1126.54Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE4.945e-1126.54Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN4.945e-1126.54Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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