BQ623220

Overview
NameBQ623220
Unique NameBQ623220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623220_ssr256 microsatellite BQ623220_ssr256:256..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:617..1054. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.499e-16
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV             +I+ISG
Sbjct:  100 KNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 8.488e-16
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            K DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+I+G
Sbjct:   95 KTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.109e-15
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            K+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT            +++ISG
Sbjct:   97 KSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.109e-15
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            K DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+++G
Sbjct:  102 KTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.225e-15
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT            AI+ISG
Sbjct:   92 KNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.185e-15
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT            +I+ISG
Sbjct:   94 KNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.226e-14
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT            +I ISG
Sbjct:  100 KNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.601e-14
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 127
            KND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:  103 KNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.311e-13
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 124
            K+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:   93 KDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.147e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 127
            K D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:   94 KQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HS181_ARATH6.499e-1665.0018.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS174_ORYSJ8.488e-1666.6717.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP17_ARATH1.109e-1565.0017.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ORYSJ1.109e-1565.0018.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_WHEAT3.225e-1566.6716.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS17B_ARATH7.185e-1563.3317.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP12_DAUCA1.226e-1465.0018.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_CHERU1.601e-1483.3318.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP11_HELAN2.311e-1380.4917.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17A_ARATH1.147e-1278.5717.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00311 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00311 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623220 ID=BQ623220; Name=BQ623220; organism=Citrus sinensis; type=EST; length=438bp
GAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGA
GGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAGCAGGTTAAGGCCAGC
ATGGAGAATGGTGTGCTCACAGTGACTGTTCCTAAACAGGAGGAGAAGAA
ACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAAGTGATAAGTGTAAATG
TTTTCAAGATTGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAAGCAAA
GCCCTTGTGTGTGTGTGTGTGTGTTTGCAAGAGCTTCCCTTCCCCCCTGT
TTAATTTGATGTGATTATGTTTGTGTGTTTGCAAGAGCTTCAGGAGCCAG
TCTCAAGCGTTGTAACTAGTTTTTTAAATGATAAAAGTGTGATGCAATAA
AATATATTTTGTAATGCGAAAAAAAAAAAAAAAAAAAA
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