BQ623226

Overview
NameBQ623226
Unique NameBQ623226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            ++LK+WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND+TP         N+WAFE
Sbjct:   84 DELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.590e-24
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 2
Query:   74 DLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +LK+WD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND+TP         N+WAFE
Sbjct:   85 ELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.975e-23
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 301
            +D+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:   79 DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.975e-23
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 301
            +D+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:   79 DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.657e-23
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   68 EEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            ++DLK WD +F++ D +T+FDLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND TP         N+WAFE
Sbjct:   73 DDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.290e-22
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   71 EDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            ++ K+WD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP         N WAFE
Sbjct:   69 DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.571e-22
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   68 EEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +EDLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND+T          NQW FE
Sbjct:   72 DEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
The following BLAST results are available for this feature:
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1_CHICK1.093e-2568.75S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO1.093e-2568.75S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN1.093e-2568.75S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK4_ARATH1.093e-2566.25SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH4.590e-2463.29SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1B_DICDI2.975e-2366.23SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
SKP1A_DICDI2.975e-2366.23SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK9_ARATH8.657e-2359.26SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK14_ARATH3.290e-2262.96SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH9.571e-2260.49SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00317 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00317 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623226 ID=BQ623226; Name=BQ623226; organism=Citrus sinensis; type=EST; length=581bp
GTTCCTGCGACCCAGGATAGCAACAACAGCGGCGCCAACAGCAACGGTAC
TGCCACCTAACGGTGGTGAGGAGGATCTCAAAAGCTGGGACACTGACTTC
GTCAAAGTTGACCAGGCCACTCTCTTCGATCTCATCCTGGCAGCAAACTA
CCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGACA
TGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG
AATGACTTCACTCCAGAGGAGGAAGAAGAGGTCCGTAGGGAGAACCAGTG
GGCTTTTGAGTGAAAGTTGTTTCAACAAAGACAATTTTTCATTATCATTG
TCTTGCAATCTTGCTGTCTTTAACATGTAGATGTAGTTTTCTAGGGCTTA
TCTTTTCCTTTCTCATTGTACTTTCGAACTTATTAGCTGTTTGAAATGTA
AATAATAGTCTGTTCTGGTGGAACTGGTAGCAGTTGGTCTGGTCCATCCT
TTCCTGCTTGCTATCAAGACCGGTGGATCATTGAATTTGACTAATTCTTT
TGGTTCCAAACAAAAGAAAAAAAAAAAAAAA
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