BQ623230

Overview
NameBQ623230
Unique NameBQ623230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9755 contig Csv1_Contig9755:181..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_SCHPO (COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe GN=csn5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.871e-19
Identity = 62/169 (36.69%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQTMMLGQEPRQTTSNLGH-----LNKPSIQALIHGLNRH-YYSIAINY 480
            G+P+EVMG + G+ V+  ++ ++D FA+P  GT   V A +    +      + K   R E V+GWYHSHP +GCWLSGVD+ TQ+  +      VAVV+DP +S++   V I AFR     T  +G +    T +  H      N PS +    G +   YYS+ I Y
Sbjct:   52 GMPLEVMGYVQGK-VEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFR-----TYPVGNDGSIRTKSRHHPSVLFKNLPSSKIEDAGAHAEAYYSLPITY 214          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_CANAL (COP9 signalosome complex subunit 5 OS=Candida albicans GN=RRI1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18
Identity = 45/124 (36.29%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGR------PEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLIN 351
            G  +E+MG+++G+ +  +++ V+D + +P  GT   V A +  + T M++ L +  +       E +VGWYH HP +GCWL G+D++TQ   + L    +A+VVDP++++K GKV I AFR ++
Sbjct:   92 GGSIEIMGMLVGK-ISGHSIIVMDTYRLPVEGTETRVNAQNEAY-TYMVEYLTERQQLSNGKNEENIVGWYHRHPRYGCWLKGIDVSTQSLNQGLQDPYLAIVVDPVKTLKQGKVEIGAFRNVS 213          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii GN=RRI1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.732e-17
Identity = 53/139 (38.13%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPE--MVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQS-VKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGH 408
            G  MEV+G++LG   DE  V VVD + +P  GT   V A    ++  +  +  +T  PE   +VGWYHSHPG+GCWLSG+D  TQ   +      +A+VVDP +S   G + I AFR +               S  GH
Sbjct:   90 GGDMEVLGMLLGYVQDEMIV-VVDSYRLPVEGTETRVNAQMESYEYTVQYL--ETAVPEGLAIVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPETADTRSVSSHSNASRYGH 225          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLI 348
            G  +EVMG+++G   ++  V V D +++P  GT   V A    ++  +  +     + + +VGWYHSHPG+GCWLS +DI TQ   +      +A+VVDP +S+ G  + I AFR +
Sbjct:   83 GGDIEVMGMLVGYTSNDMIV-VKDCYSLPVQGTETRVNAHMESYEYMVQYLDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTL 198          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_YEAST (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae GN=RRI1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 360
            G  +E+MG+++G F  +  + V+D F +P  GT   V A           +D ++  N   D     G    VVGW+HSHPG+ CWLS +DI TQ   +      VA+VVDP++S++ K++ + AFR I  ++
Sbjct:   88 GGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS7 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 360
            G  +E+MG+++G F  +  + V+D F +P  GT   V A           +D ++  N   D     G    VVGW+HSHPG+ CWLS +DI TQ   +      VA+VVDP++S++ K++ + AFR I  ++
Sbjct:   88 GGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 360
            G  +E+MG+++G F  +  + V+D F +P  GT   V A           +D ++  N   D     G    VVGW+HSHPG+ CWLS +DI TQ   +      VA+VVDP++S++ K++ + AFR I  ++
Sbjct:   88 GGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata GN=RRI1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 50/147 (34.01%), Postives = 72/147 (48.98%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSV----EAVDHVFQTNMLDMLKQTGRPEM---VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKG-KVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNK 417
            G  +EVMG++LG  +   T  + D F +P  GT   V    E+ +++ Q     + +   R E    ++GWYHSHPG+ CWLS +D+ TQ   +      +A+VVDP +S    KV I +FR    Q          TT     LNK
Sbjct:   91 GGNIEVMGMLLGNVIGN-TFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQDQNDDTNFYELNTTVFDSELNK 236          
The following BLAST results are available for this feature:
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_SCHPO3.871e-1936.69COP9 signalosome complex subunit 5 OS=Schizosaccha... [more]
CSN5_CANAL9.536e-1836.29COP9 signalosome complex subunit 5 OS=Candida albi... [more]
CSN5_ASHGO4.732e-1738.13COP9 signalosome complex subunit 5 OS=Ashbya gossy... [more]
CSN5_KLULA3.392e-1536.75COP9 signalosome complex subunit 5 OS=Kluyveromyce... [more]
CSN5_YEAST2.198e-1435.34COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS72.198e-1435.34COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS12.198e-1435.34COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_CANGA2.058e-1234.01COP9 signalosome complex subunit 5 OS=Candida glab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00321 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00321 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623230 ID=BQ623230; Name=BQ623230; organism=Citrus sinensis; type=EST; length=488bp
GGTGTGCCCATGGAGGTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGA
GTACACAGTTCGGGTTGTTGATGTGTTTGCTATGCCACAAAGTGGAACTG
GTGTTAGTGTTGAAGCTGTTGATCATGTGTTCCAGACTAACATGCTTGAC
ATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTTGGATGGTATCACTC
ACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGACATAAACACACAGC
AGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCA
ATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCCTTCCGCTTGATTAA
TCCCCAAACCATGATGCTTGGCCAAGAACCACGGCAGACAACTTCCAATC
TTGGTCATCTTAATAAGCCATCCATCCAAGCATTGATCCATGGCTTGAAT
AGACATTATTATTCTATTGCCATCAATTACAGGAAGGA
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