BQ623243

Overview
NameBQ623243
Unique NameBQ623243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.134e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGD+RSSIFDAKAGI L+  FVKLVSWYDNEWGYS+RV D
Sbjct:  288 FVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.134e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+RSSIFDAKAGIAL+ KFVKLVSWYDNE GYSTRV D
Sbjct:  289 FIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVD 329          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.640e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GDSRSSIFDA AGI LS KFVKLVSWYDNE+GYSTRV D
Sbjct:  284 FLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVD 324          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.754e-13
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+ DSRSSIFDAKAGIALS  FVKLV+WYDNEWGYS RV D
Sbjct:  290 FITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVD 330          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.208e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GDS SSIFDA+AGIAL+  FVKLVSWYDNEWGYS+RV D
Sbjct:  283 FIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLD 323          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.208e-13
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVG+  SSIFDAKAGIAL K FVKLVSWYDNEWGYS RV D
Sbjct:  290 FVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVD 330          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.208e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+RSSIFDAKAGIAL+   VKLVSWYDNEWGYS+RV D
Sbjct:  289 FIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVD 329          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.108e-13
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV D
Sbjct:  287 GDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.108e-13
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV D
Sbjct:  287 GDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.108e-13
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV D
Sbjct:  287 GDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLD 325          
The following BLAST results are available for this feature:
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3P_ATRNU2.134e-1382.93Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_PEA2.134e-1385.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CANGA3.640e-1385.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3PC_PHYPA4.754e-1382.93Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PHYIN6.208e-1380.49Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_MASBA6.208e-1382.93Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3PC_RANAC6.208e-1380.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PHANO8.108e-1384.62Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_CURLU8.108e-1384.62Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COCHE8.108e-1384.62Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00334 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00334 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623243 ID=BQ623243; Name=BQ623243; organism=Citrus sinensis; type=EST; length=154bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGGGGATTTTGATTGGCCACATGGCGAAGACCC
AGTA
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