BQ623243

Overview
NameBQ623243
Unique NameBQ623243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:368..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.965e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGD+ SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV D
Sbjct:  283 FVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVID 323          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.965e-12
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RV D
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVD 326          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.965e-12
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ SSIFDA AGI LS KFVKLV+WYDNE+GYSTRV D
Sbjct:  283 FLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVD 323          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD RSSIFDA AGI L+  FVKL+SWYDNE+GYSTRV D
Sbjct:  285 FLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+ DSRSS+FDAKAGI L+  FVKLVSWYDNE+GYSTRV D
Sbjct:  285 FLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVD 325          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ SSIFDAKAGI L+  FVKL+SWYDNE+GYS RV D
Sbjct:  286 FIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVD 326          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F GDSRSSIFDA AGIAL+  FVKLVSWYDNE+GYS RV D
Sbjct:  284 FNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVD 324          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ SSIFDA AGIAL+  FVKLVSWYDNE GYSTRV D
Sbjct:  286 FIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVID 326          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F GDS SSIFDAKAGIAL+  FVKLVSWYDNE+GYS RV D
Sbjct:  382 FNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVD 422          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GD+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RV D
Sbjct:  358 FLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVD 398          
The following BLAST results are available for this feature:
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3P_GLOMM8.965e-1275.61Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P2_SCHPO8.965e-1278.05Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_KLULA8.965e-1278.05Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_PICPA1.171e-1175.61Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PICAN1.171e-1178.05Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_YARLI1.529e-1173.17Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_TRISI1.529e-1180.49Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_DICDI1.529e-1178.05Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3PT_RAT1.529e-1180.49Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_HUMAN1.529e-1175.61Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00334 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00334 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623243 ID=BQ623243; Name=BQ623243; organism=Citrus sinensis; type=EST; length=154bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGGGGATTTTGATTGGCCACATGGCGAAGACCC
AGTA
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