BQ623251

Overview
NameBQ623251
Unique NameBQ623251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP256_ARATH (Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.386e-14
Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 2
Query:   29 MWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            +W R M +      RD  +W  ++   ++ G +  AL+ F  M  +    KP+ +T                G+ IH +++R+ Y++ +  +   ++DMYS+    D A  VF     R+++ W S++ G   +G   +    F  +  EG+ PD VTFLG+L AC   G
Sbjct:  451 IWFRQMSEL-----RDEVSWNALLTGVARVGRSEQALSFFEGMQVE---AKPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDV-VIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREG 611          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP448_ARATH (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 59/208 (28.37%), Postives = 96/208 (46.15%), Query Frame = 2
Query:    2 TCTLSARVLMWHRVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQM-FQQDKLV------------------------KPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE--GLAPDGVTFLGLLYACSHSGM 541
            TC  S ++L   + +   +    RD V   T MI  YS  G  N+A+ ++  +    D+++                        +PN                   G+QIH   LRN + +    + N L+DMY + G I  AR +F  +  ++VVSWTS++  Y ++G G KA   F +M +E  G+ P+ VTFL ++ AC+H+G+
Sbjct:  194 TCA-SLKILQQGKQVHAMVVVTGRDLVVLGTAMISFYSSVGLINEAMKVYNSLNVHTDEVMLNSLISGCIRNRNYKEAFLLMSRQRPNVRVLSSSLAGCSDNSDLWIGKQIHCVALRNGF-VSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGL 399          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 53/187 (28.34%), Postives = 80/187 (42.78%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG-------------LGDKAHWA------------------FDQMRKEGLAPDGVTFLGLLYACSHSG 538
            R+   WT +I  Y+  G  ++A+A++  M +++  + P +FT                GRQ HA   R +    + +V N +IDMY +   ID AR VFD + +R+V+SWT L+  Y   G               D   W                   FD+M K G+  D VT  G + AC+  G
Sbjct:  112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEE--ITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFV-YVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG 295          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP423_ARATH (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.089e-13
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 2
Query:   74 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            DV +W  ++  Y Q+G   + + LF ++ + D  V PN F+                G  IH+ +++   E     V NCLIDMY + G +D A +VF ++++++ VSW +++     +G  +   W F QM      PD VT+  L+ A   SG
Sbjct:  120 DVISWNSLVSGYVQSGRFQEGICLFLELHRSD--VFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVASCSRNGKLELGLWFFHQMPN----PDTVTYNELIDAFVKSG 268          

HSP 2 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 42/156 (26.92%), Postives = 78/156 (50.00%), Query Frame = 2
Query:   68 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLGLLYACSH 532
            N + ++W  ++  Y  +  + +A   F +M      V+ + ++               +G  IHA   +   +  +  VA+ LIDMYS+ G +  A ++F  + ++N++ W  +++GY  +G   +A   F+Q+++E  L PD  TFL LL  CSH
Sbjct:  282 NPNSSSWNTILTGYVNSEKSGEATEFFTKMHSSG--VRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLDSRV-VVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAVCSH 434          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP278_ARATH (Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana GN=At3g51320 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.089e-13
Identity = 49/173 (28.32%), Postives = 84/173 (48.55%), Query Frame = 2
Query:   23 VLMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            VL  H+ +FD +  KN  + +W +MI +Y        +++LF +M +     + N  T                GR +HA ++R      +  +   LIDMY +  ++  AR +FD+L  RN V+W  ++  + +HG  +     F+ M    L PD VTF+G+L  C+ +G+
Sbjct:  200 VLAAHK-LFDEMPDKN--IISWNIMISAYLGANNPGVSISLFREMVRAG--FQGNESTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSV-VIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGCARAGL 366          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 49/168 (29.17%), Postives = 82/168 (48.81%), Query Frame = 2
Query:   41 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL--APDGVTFLGLLYACSHSG 538
            ++F  +  KN    +W  ++ +Y QN     A  L+  +  +  +V+ + F                 GR IHA+ ++   E  I FV + L+DMY + G I+ +   FD + ++N+V+  SL+ GY   G  D A   F++M   G    P+ +TF+ LL ACS +G
Sbjct:  265 IIFTEMGTKN--AVSWCSLVAAYVQNHEDEKASVLY--LRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI-FVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 427          

HSP 2 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 48/153 (31.37%), Postives = 75/153 (49.02%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACS 529
            R+V +WT +I   +QNG  + AL  F +M ++   V PN FT                G+QIHA  ++    +L  FV     DMY ++   D AR +FD + +RN+ +W + ++     G   +A  AF + R+    P+ +TF   L ACS
Sbjct:   71 RNVVSWTSLISGLAQNGHFSTALVEFFEMRREG--VVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCG-RILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACS 220          

HSP 3 Score: 67.3958 bits (163), Expect = 5.060e-11
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  245 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 505
            GR +HA +++       PF+AN LI+MYS+    ++AR+V      RNVVSWTSL++G   +G    A   F +MR+EG+ P+  TF
Sbjct:   25 GRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTF 111          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            RD+  W  +I +++       A+ LF Q+ +Q+KL  P+ +T                   IHA V++  + +    + N LI  Y++ G +D    VFD++  R+VVSW S++  Y +HG  D     F +M    + PD  TF+ LL ACSH+G
Sbjct:  333 RDIVAWNGIITAFAVYDPER-AIHLFGQL-RQEKL-SPDWYTFSSVLKACAGLVTARHALSIHAQVIKGGF-LADTVLNNSLIHAYAKCGSLDLCMRVFDDMDSRDVVSWNSMLKAYSLHGQVDSILPVFQKM---DINPDSATFIALLSACSHAG 481          

HSP 2 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 49/166 (29.52%), Postives = 75/166 (45.18%), Query Frame = 2
Query:   26 LMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR---VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGL 514
            +++ R +FD +  +N  V +WT +I  Y Q G   +   LF  M        PN FT                G+Q+H   L+      I +VAN +I MY R  D   A     VF+ +K +N+V+W S++  +    LG KA   F +M  +G+  D  T L +
Sbjct:  112 ILYARQVFDTMPERN--VVSWTALITGYVQAGNEQEGFCLFSSMLSH---CFPNEFTLSSVLTSCRYEP----GKQVHGLALKLGLHCSI-YVANAVISMYGRCHDGAAAYEAWTVFEAIKFKNLVTWNSMIAAFQCCNLGKKAIGVFMRMHSDGVGFDRATLLNI 267          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 47/166 (28.31%), Postives = 79/166 (47.59%), Query Frame = 2
Query:   44 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            +F+ ++ KN  + +W  MI  + QNG A   LA F    +     +P+  T                 + IH  ++   +      +   L+D+YS+ G ++ +  VF  +   + ++WT+++  Y  HG G  A   F+ M   G++PD VTF  LL ACSHSG+
Sbjct:  191 LFEDLSIKN--LVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGH--EPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGN-KCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGL 351          

HSP 2 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 42/157 (26.75%), Postives = 74/157 (47.13%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            RD+ +W  +I  YS  G       +  +M   +   +PN  T                GR IH  V++      +  V N  I+ Y ++GD+ ++  +F++L  +N+VSW +++  +  +GL +K    F+  R+ G  PD  TFL +L +C   G+
Sbjct:   95 RDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVK-VVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGV 250          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP394_ARATH (Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 44/163 (26.99%), Postives = 79/163 (48.47%), Query Frame = 2
Query:   68 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPF--VANCLIDMYSRSGDIDTARVVFD---NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            ++D+ +W  MI  Y+Q+     AL LF +M    + VKP+A T                G++ H Y+    +  + P   +   +IDMY++ G I+TA  +F    N+    +  W +++ G   HG    A   +  ++   + P+ +TF+G+L AC H+G+
Sbjct:  399 DKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQ-VKPDAITMVSVFSAISSLGSLEEGKRAHDYL---NFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGL 557          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP242_ARATH (Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 46/166 (27.71%), Postives = 80/166 (48.19%), Query Frame = 2
Query:   44 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            +FD+++ KN  +  WT M   Y  N    D++    + F  ++   P++                  G++IH + LR    M    V    +DMYS+ G+++ A  +FD+  +R+ V + +++ G   HG   K+   F+ M + G  PD +TF+ LL AC H G+
Sbjct:  348 LFDSLSEKN--LVVWTAMFLGYL-NLRQPDSVLELARAFIANETNTPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVT-AFVDMYSKCGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGL 509          
The following BLAST results are available for this feature:
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP256_ARATH6.386e-1427.06Pentatricopeptide repeat-containing protein At3g26... [more]
PP448_ARATH8.341e-1428.37Pentatricopeptide repeat-containing protein At5g66... [more]
PP417_ARATH8.341e-1428.34Pentatricopeptide repeat-containing protein At5g44... [more]
PP423_ARATH1.089e-1329.68Putative pentatricopeptide repeat-containing prote... [more]
PP278_ARATH1.089e-1328.32Pentatricopeptide repeat-containing protein At3g51... [more]
PP312_ARATH1.858e-1329.17Pentatricopeptide repeat-containing protein At4g14... [more]
PP114_ARATH1.858e-1331.41Pentatricopeptide repeat-containing protein At1g71... [more]
PP411_ARATH3.170e-1328.31Pentatricopeptide repeat-containing protein At5g40... [more]
PP394_ARATH5.406e-1326.99Pentatricopeptide repeat-containing protein At5g19... [more]
PP242_ARATH5.406e-1327.71Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00342 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00342 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623251 ID=BQ623251; Name=BQ623251; organism=Citrus sinensis; type=EST; length=546bp
GACATGTACGCTAAGTGCAAGAGTGTTGATGTGGCACCGTGTTATGTTTG
ATGCAATTGCACCAAAAAACAGGGATGTTGCAACTTGGACAGTAATGATA
GGTAGTTATTCTCAGAATGGAGGAGCCAATGATGCCCTGGCACTTTTTCC
TCAGATGTTCCAGCAAGATAAACTTGTAAAGCCAAATGCTTTTACTTTAT
CTTGTGCTCTTATGGCTTGTGCTCGTTTGGCTGCACTGAGATTTGGTAGA
CAAATTCATGCATATGTGCTGCGGAATCAATATGAGATGTTGATTCCGTT
TGTGGCCAATTGCCTGATAGATATGTATTCACGATCAGGAGACATTGACA
CAGCTAGAGTTGTATTTGATAACTTGAAGCAAAGAAATGTTGTTTCCTGG
ACATCCTTGATGACAGGTTATGGCATGCACGGTCTTGGCGACAAAGCTCA
CTGGGCTTTTGATCAGATGAGGAAAGAAGGTCTAGCACCTGATGGTGTAA
CCTTCCTTGGTCTGCTCTATGCTTGCAGCCACTCAGGAATGGGTGA
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