BQ623251

Overview
NameBQ623251
Unique NameBQ623251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP205_ARATH (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 52/158 (32.91%), Postives = 87/158 (55.06%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLGLLYACSHSGM 541
            +DV +W  +I  ++ NG A+ ++  F  M  ++   +P+A                   +  H+YV++  ++   PF+   L+++YSR G +  A  VF+ +  ++ V WTSL+TGYG+HG G KA   F+ M K   + P+ VTFL +L ACSH+G+
Sbjct:  328 KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENN-TRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSN-PFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGL 483          

HSP 2 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 2
Query:   44 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE-GLAPDGVTFLGLLYACSHSG 538
            +F  IA K  DV +W+ +I  Y QNG A +AL +F  M   D   +PN  T                GR+ H   +R   E  +  V+  L+DMY +    + A  VF  + +++VVSW +L++G+ ++G+  ++   F  M  E    PD +  + +L +CS  G
Sbjct:  220 LFKMIAEK--DVISWSTVIACYVQNGAAAEALLVFNDMM--DDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVK-VSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELG 380          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP128_ARATH (Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 54/158 (34.18%), Postives = 87/158 (55.06%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVA-NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            R + +W  +IG  +  G AN+A+ +F  M +    ++P+ FT                  Q+H  VL+ + E     +  N LIDMY + G +D A  +F+ ++QRNVVSW+S++ GY  +G   +A   F QMR+ G+ P+ +TF+G+L AC H G+
Sbjct:  181 RKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSG--LEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGL 336          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP259_ARATH (Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 57/174 (32.76%), Postives = 92/174 (52.87%), Query Frame = 2
Query:   20 RVLMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM-RKEGLAPDGVTFLGLLYACSHSG 538
            ++L+  R +FD I     DV  W V++  Y + G  ++ L +F +M    K ++P+ F+                G+ IH +V +  +     FV   L+DMY++ G I+TA  VF  L +RNV SW +L+ GY  +G   KA    +++ R++G+ PD V  LG+L AC+H G
Sbjct:  166 KLLLDARKVFDEIPQP--DVVKWDVLMNGYVRCGLGSEGLEVFREMLV--KGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGG 335          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP212_ARATH (Pentatricopeptide repeat-containing protein At3g04750, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNG-GANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            + +FD + PK RD+ +W  ++  YS+ G        LF +M   +K VKP+  T                GR +H  V+R Q +    F+++ LIDMY + G I+ A +VF    +++V  WTS++TG   HG G +A   F +M++EG+ P+ VT L +L ACSHSG+
Sbjct:  320 QAVFDQM-PK-RDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEK-VKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKG-DAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGL 484          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 54/157 (34.39%), Postives = 86/157 (54.78%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            RD  +WT+MI  Y + G  N++L +F +M  Q   + P+ FT                G  I  Y+ +N+ +  +  V N LIDMY + G  + A+ VF ++ QR+  +WT+++ G   +G G +A   F QM+   + PD +T+LG+L AC+HSGM
Sbjct:  331 RDRISWTIMIDGYLRAGCFNESLEIFREM--QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDV-VVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGM 484          

HSP 2 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 46/186 (24.73%), Postives = 82/186 (44.09%), Query Frame = 2
Query:   74 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG-------------LGDKAHWA------------------FDQMRKEGLAPDGVTFLGLLYACSHSG 538
            DV +W +MI  Y++     +++ L  +M  +  LV P + T                 +++H YV   + E  +  + N L++ Y+  G++D A  +F ++K R+V+SWTS++ GY   G             + D+  W                   F +M+  G+ PD  T + +L AC+H G
Sbjct:  200 DVFSWNLMISGYNRMKEYEESIELLVEM--ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR-LENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLG 382          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP231_ARATH (Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   59 APKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRN---QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            A   RD+ TW  ++  +   G  +  LALF +M      ++P+  T                GR+IH Y++ +     +    F+ N L+DMY + GD+  AR+VFD+++ ++  SW  ++ GYG+   G+ A   F  M + G+ PD +TF+GLL ACSHSG
Sbjct:  322 AMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSG--IRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSG 482          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 58/168 (34.52%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            R +FD +  K  DV  W  MIG   Q     DALALF +M  Q    KP+  T                G  IH Y+ +    + +  +   L+DMY++ G+I  A  VF  ++ RN +++T+++ G  +HG    A   F++M   G+APD +TF+GLL AC H GM
Sbjct:  343 RKLFDDMEEK--DVVLWNAMIGGSVQAKRGQDALALFQEM--QTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVA-LGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 505          

HSP 2 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 478
            RD+ +W  +I  Y + G A  A+ ++  M  + + VKP+  T                G++ + YV  N   M IP V N L+DM+S+ GDI  AR +FDNL++R +VSWT++++GY   GL D +   FD M ++
Sbjct:  220 RDLVSWNCLINGYKKIGEAEKAIYVYKLM--ESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLV-NALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEK 352          

HSP 3 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 2
Query:   65 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV-KPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            +N ++ +W V I  +S++    ++  L+ QM +      +P+ FT                G  I  +VL+ + E L+  V N  I M++  GD++ AR VFD    R++VSW  L+ GY   G  +KA + +  M  EG+ PD VT +GL+ +CS  G
Sbjct:  114 ENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLE-LVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLG 271          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 59/173 (34.10%), Postives = 93/173 (53.76%), Query Frame = 2
Query:   20 RVLMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            +VL   RV  D  A   +++   T ++ +Y Q+    +AL LF +M    K V PN +T                G  +H  VL++ Y   +  V N L++MY++SG I+ AR  F  +  R++V+W ++++G   HGLG +A  AFD+M   G  P+ +TF+G+L ACSH G
Sbjct:  287 KVLYAQRVFDDTHA---QNIFLNTTIMDAYFQDKSFEEALNLFSKM--DTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHV-MVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIG 453          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP245_ARATH (Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            RD+  W  +I  Y+QNG ++DA+  F  M  Q +  +P+A T                GR++H+ +     E L  FV+N LIDMY++ GD++ A  VF+++  R+V    S+++   +HG G +A   F  M    L PD +TF+ +L AC H G
Sbjct:  237 RDLVIWNTLIAGYAQNGYSDDAIDAFFNM--QGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIE-LNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGG 389          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 55/169 (32.54%), Postives = 98/169 (57.99%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLGLLYACSHSGM 541
            R +FD++  K R+ A+W  +I  + +NG   +AL LF  M +Q   V+P   T                G+Q+HA ++R Q+++ + +VA+ L+ MY + G++  ++++FD    ++++ W S+++GY  HGLG++A   F +M   G   P+ VTF+  L ACS++GM
Sbjct:  285 RRVFDSM--KERNDASWQTVIKIHERNGFELEALDLFILMQKQG--VRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDV-YVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGM 448          
The following BLAST results are available for this feature:
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP205_ARATH7.789e-2032.91Putative pentatricopeptide repeat-containing prote... [more]
PP128_ARATH7.789e-2034.18Pentatricopeptide repeat-containing protein At1g77... [more]
PP259_ARATH1.017e-1932.76Putative pentatricopeptide repeat-containing prote... [more]
PP212_ARATH1.017e-1935.50Pentatricopeptide repeat-containing protein At3g04... [more]
PP235_ARATH1.329e-1934.39Putative pentatricopeptide repeat-containing prote... [more]
PP231_ARATH1.329e-1933.13Pentatricopeptide repeat-containing protein At3g14... [more]
PP169_ARATH1.329e-1934.52Pentatricopeptide repeat-containing protein At2g22... [more]
PP406_ARATH1.735e-1934.10Pentatricopeptide repeat-containing protein At5g39... [more]
PP245_ARATH1.735e-1933.97Pentatricopeptide repeat-containing protein At3g21... [more]
PPR25_ARATH2.960e-1932.54Pentatricopeptide repeat-containing protein At1g09... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00342 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00342 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623251 ID=BQ623251; Name=BQ623251; organism=Citrus sinensis; type=EST; length=546bp
GACATGTACGCTAAGTGCAAGAGTGTTGATGTGGCACCGTGTTATGTTTG
ATGCAATTGCACCAAAAAACAGGGATGTTGCAACTTGGACAGTAATGATA
GGTAGTTATTCTCAGAATGGAGGAGCCAATGATGCCCTGGCACTTTTTCC
TCAGATGTTCCAGCAAGATAAACTTGTAAAGCCAAATGCTTTTACTTTAT
CTTGTGCTCTTATGGCTTGTGCTCGTTTGGCTGCACTGAGATTTGGTAGA
CAAATTCATGCATATGTGCTGCGGAATCAATATGAGATGTTGATTCCGTT
TGTGGCCAATTGCCTGATAGATATGTATTCACGATCAGGAGACATTGACA
CAGCTAGAGTTGTATTTGATAACTTGAAGCAAAGAAATGTTGTTTCCTGG
ACATCCTTGATGACAGGTTATGGCATGCACGGTCTTGGCGACAAAGCTCA
CTGGGCTTTTGATCAGATGAGGAAAGAAGGTCTAGCACCTGATGGTGTAA
CCTTCCTTGGTCTGCTCTATGCTTGCAGCCACTCAGGAATGGGTGA
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