BQ623254

Overview
NameBQ623254
Unique NameBQ623254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.242e-59
Identity = 110/185 (59.46%), Postives = 136/185 (73.51%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 555
            DKPLRLP+QDVYKI G+GTVP GRVETG L PGM V F P+   +EVKSVEMHHE L +A PGDNVGFNV+ ++VKDLK+GYV  +  +DP  G  +FT+QVI+MNHP +I  GY PV+DCHT+HIA +F   L K+D+R+ K   + P     GD   VKM+P KP+  ETF++Y PLG FAVR
Sbjct:  212 DKPLRLPIQDVYKISGVGTVPAGRVETGELAPGMKVVFAPTSQVSEVKSVEMHHEELKKAGPGDNVGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.119e-59
Identity = 108/202 (53.47%), Postives = 144/202 (71.29%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            +KPLR+P+QD Y I GIGTVPVGRVETG+LK GM VTF P+  + EVKS+EMHHE + +A+PGDN+GFNV+ +   D++RG V   S D+P   A  FT+Q++++ HP  I  GY PV  CHT+  A  F E++ K+D R+G+ LE+ P FLK GDA  +K  PTKP+ +E   E+P LGRFA+RDM QT+A G+  +V KK
Sbjct:  222 EKPLRVPIQDAYSISGIGTVPVGRVETGILKKGMNVTFMPANKSGEVKSIEMHHEEIPQAVPGDNIGFNVRGIGKDDVRRGDVCGAS-DNPPAVAEEFTAQIVVLQHPSAITVGYTPVFHCHTAQTACTFTELVKKLDPRTGQTLEENPTFLKAGDAAIIKCHPTKPLCLENAKEFPQLGRFAIRDMGQTIAAGMCINVVKK 422          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.767e-59
Identity = 111/202 (54.95%), Postives = 141/202 (69.80%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 606
            DKPLRLP+QDVY I G+GTVPVGRVETG+LK G  ++F P+ +T EVKS+EMHHE   EALPGDNVGFNV+ ++  D++RG V    ++ P   A  FT+QV+++ HP  +  GY PV  CHTS  A  F E+  K+D RSG+  E+ P FLK GDA    + PT+P+V+ET  E P LGRFAVRDM  TVA G++ SV  K
Sbjct:  222 DKPLRLPIQDVYTISGVGTVPVGRVETGILKKGQKISFMPANVTGEVKSIEMHHEEFPEALPGDNVGFNVRGIAKNDVRRGDVCGPIENPPTV-AEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTACMFTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.614e-59
Identity = 106/196 (54.08%), Postives = 145/196 (73.98%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVI 588
            DKPLR+P+QDVY I G+GTVPVGRVE+GVL+ G  V F P+G++ EVKS+EMHHE + EA PGDN+GFNV+ VS KD++RG VA +  D+P     +FT+Q++++ HP  I  GY PV+  HT+ IA +F E+  KID R+G+  E+ P+FLK GDA  VK+ PT+PMV+E   + PP+GRFA+RDM  T+  G++
Sbjct:  222 DKPLRIPIQDVYSISGVGTVPVGRVESGVLRVGDKVVFEPAGVSGEVKSIEMHHEPIQEAYPGDNIGFNVRGVSKKDIRRGDVAGH-PDNPPTVVKDFTAQLVVLQHPTAITVGYTPVVHAHTAQIACRFVELQKKIDPRTGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGMV 416          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.373e-58
Identity = 109/211 (51.66%), Postives = 148/211 (70.14%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G +V F P+       +  EVKS+EMHHE + EALPGDN+GFNV+ V   D+KRG VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT  +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTKPMV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  218 DKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPMQEALPGDNIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.373e-58
Identity = 110/201 (54.73%), Postives = 144/201 (71.64%), Query Frame = 1
Query:    7 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A++FT+Q++++ HP  + +GY PV   HT+ IA  FAEI  K++  +G+ LE+ P FLK GDA  VK+IPTKPMV+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  228 PLRLPIQDVYTITGVGTVPVGRVETGIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTV-ATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.794e-58
Identity = 109/211 (51.66%), Postives = 148/211 (70.14%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G +V F P+       +  EVKS+EMHHE + EALPGDN+GFNV+ V   D+KRG VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT  +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTKPMV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  218 DKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPMQEALPGDNIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.060e-58
Identity = 110/201 (54.73%), Postives = 143/201 (71.14%), Query Frame = 1
Query:    7 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A++FT+Q++++ HP  +  GY PV   HT+ IA  FAEI  K++  +G+ LE+ P FLK GDA  VK+IPTKPMV+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  228 PLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTV-ATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.219e-58
Identity = 107/199 (53.77%), Postives = 144/199 (72.36%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 597
            DKPLR+P+Q+VY I G+GTVPVGRVETGVLK G  V F P G+  EV+S+EMHH+ L +A PGDN+GFNV+ +S KD++RG VA +  D P   A  FT+++ ++ HP  I  GY PV+  HT+ IA +  EI  K+D R+G+ +EK P+FLK GDA  VK  P KPMV+E +SE+P LGRFA+RDM +T+ +G++  V
Sbjct:  232 DKPLRIPIQNVYSIPGVGTVPVGRVETGVLKVGDKVVFMPPGVVGEVRSIEMHHQPLQQAEPGDNIGFNVRGISKKDIRRGDVAGH-VDKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDV 429          
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.903e-58
Identity = 109/211 (51.66%), Postives = 147/211 (69.67%), Query Frame = 1
Query:    1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 609
            DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G +V F P+       +  EVKS+EMHHE L EA PGDN+GFNV+ V   D+KRG VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT+ +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTK MV+E   E P +GRFA+RDM QTVA G++ S+ K D
Sbjct:  218 DKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          
The following BLAST results are available for this feature:
BLAST of BQ623254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_GIALA1.242e-5959.46Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_METHJ2.119e-5953.47Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_METLZ2.767e-5954.95Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_ARCFU3.614e-5954.08Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_THEON1.373e-5851.66Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_METVA1.373e-5854.73Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_THECE1.794e-5851.66Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_METVS3.060e-5854.73Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_HYPBU5.219e-5853.77Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_PYRKO8.903e-5851.66Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00345 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623254 ID=BQ623254; Name=BQ623254; organism=Citrus sinensis; type=EST; length=687bp
GACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATTGGTGGTAT
TGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAAGCCCGGTA
TGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTAAGTCAGTT
GAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGATAATGTGGG
GTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGGTTACGTTG
CATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACTTCACCTCC
CAAGTTATCATCATGAACCACCCTGGCCAGATTGGAAACGGTTATGCACC
TGTTCTTGATTGCCACACTTCCCACATTGCTGTCAAGTTTGCTGAAATCT
TGACCAAGATTGACAGGCGATCTGGTAAGGAGCTGGAGAAGGAGCCCAAA
TTCTTAAAGAATGGTGATGCTGGGTTTGTTAAGATGATTCCCACCAAGCC
TATGGTTGTGGAAACTTTCTCCGAATATCCCCCACTTGGTCGTTTTGCTG
TGAGAGACATGCGCCAGACTGTCGCTGTTGGAGTCATCAAGAGCGTGGAC
AAGAAGGATCCATCTGGAGCCAAGGTAACCAAGTCTGCTGCCAAGAAGAA
GTGAACCGTGCTGGTATCTTTGTCTGCAAGTAATGTG
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