BQ623257

Overview
NameBQ623257
Unique NameBQ623257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623257_ssr417 microsatellite BQ623257_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5285 contig Csv1_Contig5285:374..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_SINMW (Transketolase OS=Sinorhizobium medicae (strain WSM419) GN=cbbT PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    7 WELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            WE F+ Q  AY+  VL  A   R++IEA    GW++ +G  G  +G+  FGASAPAG +Y+ FGITA+ V+  A E+
Sbjct:  591 WEKFEVQDLAYRRKVLGDA--PRIAIEAAGRLGWDRWMGPDGAFVGMTGFGASAPAGDLYRHFGITADHVVAEALEL 665          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_AQUAE (Transketolase OS=Aquifex aeolicus GN=tkt PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAV 216
            ELF+EQ + YK  VLP  V+ RV++EAG   GW K VGS G  I ++ FG SAP   +++ +G T E V
Sbjct:  611 ELFEEQPEEYKREVLPPEVTKRVAVEAGRDTGWYKYVGSDGLVISLNEFGKSAPGSVLFEYYGFTPENV 679          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_MYCTU (Transketolase OS=Mycobacterium tuberculosis GN=tkt PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.648e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 231
            E F+ Q   Y+++VLP  VSARV++EAG    W ++VG  G+ + I+ +G SA    +++E+G TAEAV  AA+
Sbjct:  622 EWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIVSIEHYGESADHKTLFREYGFTAEAVAAAAE 695          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_MYCBO (Transketolase OS=Mycobacterium bovis GN=tkt PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.648e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   10 ELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 231
            E F+ Q   Y+++VLP  VSARV++EAG    W ++VG  G+ + I+ +G SA    +++E+G TAEAV  AA+
Sbjct:  622 EWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIVSIEHYGESADHKTLFREYGFTAEAVAAAAE 695          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_RHIME (Transketolase OS=Rhizobium meliloti GN=cbbT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    7 WELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            WE F+ Q  AY   VL  A   R++IEA    GW++ +G     +G+  FGASAPAG +Y+ FGITA+ V+  A E+
Sbjct:  591 WEKFEAQDAAYHRQVLGDA--PRIAIEAAGRLGWDRWMGPDSAFVGMTGFGASAPAGDLYRHFGITADHVVAEALEL 665          
The following BLAST results are available for this feature:
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TKT_SINMW4.337e-1245.45Transketolase OS=Sinorhizobium medicae (strain WSM... [more]
TKT_AQUAE5.664e-1247.83Transketolase OS=Aquifex aeolicus GN=tkt PE=3 SV=1[more]
TKT_MYCTU1.648e-1143.24Transketolase OS=Mycobacterium tuberculosis GN=tkt... [more]
TKT_MYCBO1.648e-1143.24Transketolase OS=Mycobacterium bovis GN=tkt PE=3 S... [more]
TKT_RHIME2.152e-1144.16Transketolase OS=Rhizobium meliloti GN=cbbT PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00348 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00348 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623257 ID=BQ623257; Name=BQ623257; organism=Citrus sinensis; type=EST; length=529bp
GTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCTACAAGGAAAGTGT
GCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAAGCTGGATCTACAT
TTGGGTGGGAGAAGATTGTTGGAAGCAAAGGAAAGGCCATCGGCATTGAC
CGATTCGGTGCTAGTGCACCAGCAGGCAAAATATACAAGGAGTTTGGTAT
CACCGCGGAGGCTGTTATCACTGCAGCCAAAGAAGTCTGCTAAGCTTGGT
TAGTCAAAAACTTCTTATTATTCCATATGCATTTGGGAATTGGTGATTAC
AGTGAAGAGACCATTCCCAAGAGAGTTGCTTCATTATGGTCTCTCTTGTT
TTAATAAAAGCAAGATTATTTTTCTTCCTTTTGCTTATTATTCCACTGCA
GAGCATCGTAGATTGAAGAGAGAGAGAGGGAGAGAGAGTAGGGCTTGTTC
ATGTTCATGAATTTGTATCAAACTCTTGGACCTATCTTGAGATTTGTAAT
GTTTCCTGTTGATTTTGATGCAAATTTGC
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