BQ623261

Overview
NameBQ623261
Unique NameBQ623261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623261 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  302 ETMALSPARVDWKETPEGHFIMLDVP-GVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQ 616
            +T A +   ++ +ET E +    D+P GVK++E+++EV+E  VL ++G         G + H +ERS   F+ +F LPD+  +D V+A ++ G+LT+++ K+  D+
Sbjct:   34 DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTVPKVVTDK 139          
BLAST of BQ623261 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  254 DPFRVLEQI----PFEL-------ERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 601
            DPF+ ++++    PFEL        R    A  PA  + +ET E +    D+PGV   ++++ +  +RV  VSG          ++++  ER+ G F R F LP+ VD D+V+A L+NGVLTL+L K
Sbjct:   21 DPFQQMQELMNWDPFELANHPWFANRQGPPAFVPA-FEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLTLPK 145          
BLAST of BQ623261 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 36/108 (33.33%), Postives = 66/108 (61.11%), Query Frame = 2
Query:  302 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXX-GDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIK 622
            + MA +PA  D KE P  +  ++D+PG+K  ++K++V+ + VL +SG          G ++ R+ER  GK  R+F LP+N + + + A  ++GVLT++++ + P + K
Sbjct:   40 KAMAATPA--DVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPK 145          
BLAST of BQ623261 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 44/132 (33.33%), Postives = 72/132 (54.55%), Query Frame = 2
Query:  278 IPFELERD----------ETMALSPARVDWKETPEGHFIML--DVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGD-----QWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIK 622
            +P ELER           +  A++   +D KE      ++L  D+PGV   ++++EVE+  VL +SG          D     ++ R+ER  GKF R+F LP++ DLD V+A+ ++GVLT+++ K  P + K
Sbjct:   24 LPDELERQLNPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPK 155          
BLAST of BQ623261 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 2
Query:  425 VLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 601
            +L++SG          D WHRVERS GKF R F+LPDN  +D V+A +ENGVLT+++ K
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPK 59          
The following BLAST results are available for this feature:
BLAST of BQ623261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS17B_ORYSJ2.755e-1233.0217.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
SP21_STIAU1.786e-1135.43Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP21_IPONI2.332e-1133.3317.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP19_ORYSJ5.195e-1133.3319.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP12_SOYBN5.195e-1150.85Class I heat shock protein (Fragment) OS=Glycine m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00352 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00352 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623261 ID=BQ623261; Name=BQ623261; organism=Citrus sinensis; type=EST; length=626bp
TGTCAATATCTATCTAGCTTCAAGCCTCTCTACCAACAAGCACATTACAT
ATAATACATCAAGCACAAAGCCAAAAAGGAAGGAAGAAATGAGGCAGCAA
CAACAAACACGGCCCTTTAATGTTAATTTGCTGCCAATGCTGCTCTTGGC
AATATTGGCATGTCTTGTGGGCTCATCAAATGGCTCTCTGCTGACGCCCT
TCGCTGATCGTCCGAGGAGTCTGTTATCCGATCTCTGGACAGAACGTTTG
GCAGACCCCTTCCGGGTGCTAGAGCAAATCCCATTTGAGCTCGAGAGGGA
CGAGACCATGGCGCTATCTCCCGCTAGAGTGGACTGGAAAGAGACACCGG
AGGGTCACTTCATAATGCTGGATGTACCGGGGGTGAAGAGGGACGAGCTG
AAGATTGAAGTTGAGGAGAATCGCGTGCTGCGAGTGAGCGGAGAGAGGAA
ACGGGAGGAGGAGAAGAAGGGCGATCAGTGGCACAGAGTGGAGAGATCCC
ATGGCAAGTTTTGGAGGCAGTTCAAGCTGCCGGACAATGTGGATTTAGAT
TCTGTACAGGCTAAGCTTGAAAATGGGGTGCTCACTTTGTCCTTGAAAAA
GCTGTCACCTGACCAGATCAAAGGTC
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