BQ623262

Overview
NameBQ623262
Unique NameBQ623262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:409..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.737e-17
Identity = 64/177 (36.16%), Postives = 90/177 (50.85%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY--LGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+GR+AMLGA+G + PE+L K  G+  +E    WF+ G  I   G  +Y  +P  +           ++ LMG  E  R       G  G   + G + +  LG + DP                  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPV NN
Sbjct:  100 VIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGE-GNDLYPGGQYFDPLGLADDPV-----------------TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 66/180 (36.67%), Postives = 88/180 (48.89%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 508
            VI+ R+A+LGA+G + PE+L   AG+   E    WF+ G  I   G  +Y   P  +          +++ LMG  E  R     N G  G     G +  Y G S DP               D  +  + K+KE+KNGRLAM +  G+FVQ +VTG GP QNL DHLADP  NN   +
Sbjct:   89 VIHARWALLGALGILTPELLSTYAGVKFGEPV--WFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAA 248          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 64/175 (36.57%), Postives = 87/175 (49.71%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            +I+ R+AMLGA+G   PE+L K+G    E    WF+ G  I   G  +Y  +P  +          +++ LMG  E  R     N G  G     G +  Y G S DP               D  +  + K+KE+KNGRLA  ++ G+FVQ +VTG GP QNL DHLA+P  NN
Sbjct:   87 LIHARWAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 60/174 (34.48%), Postives = 86/174 (49.43%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            VI+ R+A+   +G + PE+L + G+   E    WF+ G  I   G  ++  +P          ++  ++ LMG  E             GR   +    YLGGS DP               D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct:   98 VIHCRWAIAVGLGCVFPELLARNGVKFGEGV--WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-------GRLGEVVDPLYLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.068e-15
Identity = 57/173 (32.95%), Postives = 80/173 (46.24%), Query Frame = 2
Query:    2 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 499
            +I+ R+AML   G I PE LG    +  +   A        P G   Y   P       T+  +E   + F EH+R  +  +            +KY GG+ DP              KD    ++ K+KE+KNGRLA+LAI+G+ V Q    G GP +NL  HLADP +NN+
Sbjct:   89 LIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAI-------PGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEK----------KKYPGGAFDPL----------GYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  164 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            ++  ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   18 IWATQVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------ASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 112          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 56/163 (34.36%), Postives = 77/163 (47.24%), Query Frame = 2
Query:   14 RYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 499
            R+AML   G + PE LG    +  +   A    G     G    W +  T+  +E   + FAE +R  +  +P           +KY GG+ DP              KD    ++ KLKE+KNGRLAMLA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct:   92 RWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDPL----------GFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  272 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   40 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  272 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  272 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 496
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
The following BLAST results are available for this feature:
BLAST of BQ623262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB23_HORVU1.737e-1736.16Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO3.869e-1736.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.470e-1636.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE5.587e-1634.48Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB11_SOLLC8.068e-1532.95Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_RAPSA2.347e-1442.34Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU2.347e-1434.36Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2D_SOLLC6.830e-1450.67Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC6.830e-1450.67Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC6.830e-1450.67Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00353 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00353 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623262 ID=BQ623262; Name=BQ623262; organism=Citrus sinensis; type=EST; length=639bp
GGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCAC
CGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCC
TGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGC
AGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCG
AGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAA
TACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTA
CCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGT
CAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAATG
TTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCC
TTACCAGAACCTATTGGATCACTTGGCTGATCCTGTAAACAACAATGTTT
TGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGGTCATTGCTTGG
AATTATATATTCCAAGCCTTGGCATCCCCCACTCTGTTCTATTCTACTTT
CCCCATTGGAAAATTATCTATGTGAGAAGTGAATGTAAC
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