BQ623275

Overview
NameBQ623275
Unique NameBQ623275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVR--PLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 443
            +VLAATN P+D+DEA+ RRL +R+ + LPD  +R+ +I + L   E+ASDV++E +A   +GYSG DL N+C  A+                      R      S  D+   P+ M DF+ A  +V  SVSS     +E  +W   +G
Sbjct:  385 MVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDAS----------MNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHE--KWLSEFG 521          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 410
            +V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++  S  +   N+
Sbjct:  232 IVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAAFQNV 354          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 410
            +V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++  S  +   N+
Sbjct:  232 IVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAAFQNV 354          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.674e-14
Identity = 56/151 (37.09%), Postives = 74/151 (49.01%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPL---KMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 443
            LV+ ATNRP +LDEAV RR  RRL V LP    R+KII  ++ + +   DV  +  +A + DGYSG+D+  LC  A+  P                     +P     ++   L    MDDFK A   +  SVSSE     E   WNE+YG
Sbjct:  389 LVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAP-----------------LRSLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSEDCKQFE--AWNEIYG 520          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.104e-14
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +++ ATNRP DLD A++RR+P R  +N P+   R+ I+++IL  E + S V+L  IA   DG+SGSDL+ +C  AA
Sbjct:  236 IIMGATNRPQDLDSAILRRMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAA 311          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.104e-14
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQV 377
            +V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++
Sbjct:  232 IVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKM 343          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  DV LE IA+  +GYSG+D+ N+C  A+
Sbjct:  351 MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDAS 426          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 449
            LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   SD + + +   +DG+SG+D+  LC  A+  P                  + A     S   VRP+   DF+ A + V  +VS +   + E   WNE +G G
Sbjct:  549 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGP--------------IRSLHAADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLELYE--NWNETFGCG 682          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.320e-13
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  351 MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDAS 426          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.320e-13
Identity = 45/147 (30.61%), Postives = 77/147 (52.38%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 443
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + ++ASDVDL   A   +GYSG+D+ N+C  A+                     +             P+ M+DF+ A +++  SVS  + ++ +   W   +G
Sbjct:  351 MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRALSKDELQ---------MPVTMEDFELALKKISKSVS--AADLEKYESWMSEFG 486          
The following BLAST results are available for this feature:
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
KTNA1_ARATH1.606e-1435.57Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
ATAD1_MOUSE3.579e-1433.82ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN3.579e-1433.82ATPase family AAA domain-containing protein 1 OS=H... [more]
FIGL1_DROME4.674e-1437.09Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
ATD1B_DANRE6.104e-1446.05ATPase family AAA domain-containing protein 1-B OS... [more]
ATAD1_RAT6.104e-1435.20ATPase family AAA domain-containing protein 1 OS=R... [more]
KATL1_MOUSE1.360e-1347.37Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
FIGL1_MOUSE1.360e-1333.33Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
KATL1_RAT2.320e-1346.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_DANRE2.320e-1330.61Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00366 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623275 ID=BQ623275; Name=BQ623275; organism=Citrus sinensis; type=EST; length=602bp
TTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCTTGATGAGGCTGTT
GTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGCCAGATGCCCCAAA
CAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAAGAATTGGCATCTG
ATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGGGTACTCTGGAAGT
GATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTCCCATACGAGAAAT
TTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTGGCCGAGAATAGAG
CTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCCTCTGAAGATGGAC
GATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTGTATCATCAGAGTC
TACAAATATGAATGAGCTCCTTCAATGGAATGAACTATATGGAGAAGGGT
GGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTAGAAGGTGGTATC
TCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTATCATCCTAAAT
GATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCTGTTGGGGCTGT
CC
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