BQ623284

Overview
NameBQ623284
Unique NameBQ623284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:160..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: ASCD_YERPS (CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase OS=Yersinia pseudotuberculosis GN=ascD PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 28/75 (37.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  154 SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 378
            S ILDAA ++ + + YSC+ G C SC   ++SG VD +E +FL ++ + +G +LTC +   SD+ ++ +   EL+
Sbjct:   20 STILDAALDSNIHIEYSCKDGTCGSCKAILISGEVDSAENTFLTEEDVAKGAILTCCSKAKSDIELDVNYYPELS 94
[Close]
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: ASCD_YERPE (CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase OS=Yersinia pestis GN=ascD PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 28/75 (37.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  154 SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 378
            S ILDAA ++ + + YSC+ G C SC   ++SG VD +E +FL ++ + +G +LTC +   SD+ ++ +   EL+
Sbjct:   20 STILDAALDSNIHIEYSCKDGTCGSCKAILISGEVDSAENTFLTEEDVAKGAILTCCSKAKSDIELDVNYYPELS 94
The following BLAST results are available for this feature:
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ASCD_YERPS5.662e-1137.33CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydra... [more]
ASCD_YERPE5.662e-1137.33CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00375 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00375 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623284 ID=BQ623284; Name=BQ623284; organism=Citrus sinensis; type=EST; length=461bp
CCTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATT
TGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGAT
GACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTA
CTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTG
GAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGA
GAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTAT
AGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATA
TCTCATTATTATCTTCTCTTTTATGTGTTGGGTTTTGGCTGATTATTTTA
ATGCTTTGAAA
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