BQ623284

Overview
NameBQ623284
Unique NameBQ623284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:160..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MATYKV L+    G    I+  DD++ILDAAEE G+DLPYSCRAGACS+C GKVVSGTVDQS+QSFLDDDQI  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MATYKV L+    G    I+  DD++ILDAAEE G+DLPYSCRAGACS+C GKVVSGTVDQS+QSFLDDDQI  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 6.641e-36
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MATYKV LI    G  + I  PDD +ILDAAEEAG+DLPYSCRAGACS+C GK++SGTVDQS+QSFLDDDQI  G+VLTC AYPTSD  IETHKEEEL
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.674e-36
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            ATY VKLI P GE  I C +D +ILDAAE+AG+DLPYSCRAGACSSCTG V  GTVDQS+QSFLDDDQ+ +GF LTC  YPTS+ TIETHKE++L
Sbjct:    1 ATYSVKLINPDGEVTIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.133e-35
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MATYKV LI    G  + I   DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ SGTVDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEEEL
Sbjct:    1 MATYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.932e-35
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MATYKV LI+   G  E I+C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ SG++DQS+QSFLDDDQI  G+VLTC AYPTSD TI+TH+EE L
Sbjct:    1 MATYKVTLISEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.305e-35
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            A+YKVKL+TP G +E  CPDD +ILD AEE G+ LPYSCRAG+CSSC GKV +G V+QS+ SFLDDDQI EG+VLTC AY  SDVTIETHKEEEL
Sbjct:    1 ASYKVKLVTPEGTQEFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 5.622e-35
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MATYKV LI    G  E I+C DD++ILDAAEEAGLDLPYSCRAGACS+C G + SGT+DQS+QSFLDDDQI  G+VLTC AYPTSD TI+TH+EE L
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 5.622e-35
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MAT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 5.622e-35
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MAT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER1_SYNP63.894e-3675.51Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE73.894e-3675.51Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER_MASLA6.641e-3674.49Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER_EUGVI8.674e-3672.63Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_CHLFR1.133e-3575.51Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER_SPIMA1.932e-3572.45Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER_MEDSA4.305e-3572.63Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_SPIPL5.622e-3572.45Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_NOSMU5.622e-3572.45Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP5.622e-3572.45Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00375 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00375 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623284 ID=BQ623284; Name=BQ623284; organism=Citrus sinensis; type=EST; length=461bp
CCTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATT
TGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGAT
GACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTA
CTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTG
GAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGA
GAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTAT
AGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATA
TCTCATTATTATCTTCTCTTTTATGTGTTGGGTTTTGGCTGATTATTTTA
ATGCTTTGAAA
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