BQ623285

Overview
NameBQ623285
Unique NameBQ623285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVR 259
            DHK     E+ RVE AGG ++     R+ G+LA +RS+GD++    V+  P     E +  D+FLILA DGLWDV+ ++ AC++++
Sbjct:  167 DHKASDTLEMQRVEQAGGLIMK---SRVNGMLAVTRSLGDKFFDSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQDACELIK 249          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: P2C50_ARATH (Putative protein phosphatase 2C 50 OS=Arabidopsis thaliana GN=At3g63320 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 52/146 (35.62%), Postives = 77/146 (52.74%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNG-PRILGVLATSRSIGDQYLKPF-VISKPDVMVTE-RSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQN-PXXXXXXXXXXXXISRGSSDNISVIVVELNKPTKFNS 427
            DH PDR DE+ RV+AAGG V  W G PR+ G LA SRSIGD   + + VIS P+VM  +     D +L+++SDG+++ +  + AC  +       +K  +S  AG  +                +GS DN++ +VV L     + S
Sbjct:  248 DHHPDREDEMLRVKAAGGYVTKWAGVPRVNGQLAVSRSIGDLTYRSYGVISAPEVMDWQPLVANDSYLVVSSDGIFEKLEVQDACDRL-----WEVKNQTSFGAGVPSYCSISLADCLVNTAFEKGSMDNMAAVVVPLKSNLDWES 388          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNG--PRILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVEL 403
            DH+P  H E   +E  GG V N  G  PR+ G LA SR+ GD+ LK  + S PDV  +   D  + L+LASDGLW V++N+ A  + RR     +K A  +                   + R S D+IS IVV L
Sbjct:  164 DHEP--HTERLSIEGKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKTHLRSDPDVKDSSIDDHTDVLVLASDGLWKVMANQEAIDIARR-IKDPLKAAKELTT---------------EALRRDSKDDISCIVVRL 281          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGP-RILGVLATSRSIGDQYLKPF--VISKPDVMVTERSD-RDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNKPTK 418
            DHKP +  E  R++ AGG  I++NG  R+ G+LA SRS+GD  LK    VI  PD++  +    + EF+ILASDGLWD  SNE A + ++         A S+                     RG  DNI+V+VV+    +K
Sbjct:  230 DHKPYQLKERKRIKRAGG-FISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSI---------------VLQSFYRGCPDNITVMVVKFRNSSK 356          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGP-RILGVLATSRSIGDQYLKPF--VISKPDVMVTERSD-RDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNKPTK 418
            DHKP +  E  R++ AGG  I++NG  R+ G+LA SRS+GD  LK    VI  PD++  +    + EF+ILASDGLWD  SNE A + ++         A S+                     RG  DNI+V+VV+    +K
Sbjct:  230 DHKPYQLKERKRIKRAGG-FISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSI---------------VLQSFYRGCPDNITVMVVKFRNSSK 356          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 2
Query:    5 HKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVR----RCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNKP 412
            HKP+R DE  R+EA GG V   +  R+ G LA SR+IGD + KP+V  + D    E +  +++L+LA DG +DVV +     +V     R     ++ A  + A  ++               RGS DNI+V+VV L +P
Sbjct:  289 HKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPHHEVTGLVHGHLLRHKGNGMRIAEELVAVARD---------------RGSHDNITVMVVFLREP 413          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PPM1F_HUMAN (Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 2
Query:    5 HKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNKP 412
            H+P+R DE  R+EA GG V + +  R+ G LA SR+IGD + KP+V  + D      +  +++L+LA DG +DVV ++    +V+   + +           Q                RGS DNI+V+VV L  P
Sbjct:  292 HRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQ-----------QGSGLRVAEELVAAARERGSHDNITVMVVFLRDP 416          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: P2C76_ORYSJ (Putative protein phosphatase 2C 76 OS=Oryza sativa subsp. japonica GN=Os11g0586100 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNG-PRILGVLATSRSIGD-QYLKPFVISKPDVMVTER-SDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVEL 403
            DH PDR DE +RVEAAGG V+ W G  R+ G LA SR+IGD  Y +  VI  P++   +  S  D FLI +SDG+++ ++ +  C ++ R   G  +   S     +N             + +G++DN++ ++V L
Sbjct:  325 DHHPDREDERSRVEAAGGYVLEWAGVHRVNGELALSRAIGDVPYKRYGVIPTPELTEWQSLSANDTFLIASSDGVFEKMTMQDVCDLMLRVKLGVNQELGSFAVTQRN----LADYVVDLALEKGTTDNVAAVIVPL 457          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGP-RILGVLATSRSIGDQYLKPF--VISKPDVMVTERSD-RDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNKPTK 418
            DHKP +  E  R++ AGG  I++NG  R+ G+LA SRS+GD  LK    VI  PD++  +    + EF+ILASDGLWD  SNE A + ++         A S+                     RG  DNI+V+VV+    +K
Sbjct:  230 DHKPYQLKERKRIKRAGG-FISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKDRLDEPHFGAKSI---------------VLQSFYRGCPDNITVMVVKFRNSSK 356          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 48/139 (34.53%), Postives = 73/139 (52.52%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGD-QYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSG----RIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVEL 403
            +H P +++E  R++ AGG V      R+LGVL  SRSIGD QY +  V S PD+   + +  D F++LA DGL+ V + E A   +  C       R +   +VDA  +              + RGS+DN++V+VV +
Sbjct:  237 EHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQRREGKPTVDARYE----AACNRLANKAVQRGSADNVTVMVVRI 368          
The following BLAST results are available for this feature:
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PP2C1_YEAST9.665e-1340.70Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]
P2C50_ARATH9.665e-1335.62Putative protein phosphatase 2C 50 OS=Arabidopsis ... [more]
P2C10_ARATH9.665e-1337.50Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
PPM1L_MOUSE1.262e-1237.06Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]
PPM1L_HUMAN1.262e-1237.06Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
PPM1F_MOUSE1.262e-1235.00Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
PPM1F_HUMAN1.262e-1233.09Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE... [more]
P2C76_ORYSJ1.649e-1235.04Putative protein phosphatase 2C 76 OS=Oryza sativa... [more]
PPM1L_BOVIN2.153e-1237.06Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
ILKAP_BOVIN2.153e-1234.53Integrin-linked kinase-associated serine/threonine... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00376 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00376 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623285 ID=BQ623285; Name=BQ623285; organism=Citrus sinensis; type=EST; length=632bp
TGATCATAAGCCTGACAGACATGATGAACTGACAAGAGTAGAAGCTGCTG
GAGGAAGGGTCATAAACTGGAACGGCCCCCGAATCTTAGGAGTTCTTGCC
ACCTCCAGATCTATAGGCGATCAATACTTGAAACCATTTGTGATATCAAA
GCCAGATGTGATGGTGACTGAAAGAAGCGACCGCGATGAATTCCTCATAC
TTGCTAGCGATGGCTTATGGGATGTTGTATCAAATGAAGCAGCATGCCAA
GTCGTGAGGAGATGTTTCAGCGGCCGGATAAAATGGGCATCCTCCGTCGA
CGCCGGGAACCAAAACCCCGCTGCCAGAGCAGCAGCAGTGCTGGTCGAGC
TAGCCATCTCTCGGGGCAGCAGTGACAATATAAGCGTCATAGTAGTTGAG
CTAAATAAACCTACCAAGTTTAATTCCTAGTGCATCATAAAATTTAATAA
ACAGCAACAGAAGTTCGTTTTCGAAGATTTTAACCATTGTTTTGTTTAGG
TAGAAACCATGTTTTCAATTCAGAAAATGAACCGAGAGCGGCGGGAGCTC
TGTTGAATTGACGAGCTTTTCAGGGGGATTTGTTGGATGTAACATTTAAT
TCATTTGGTCAACTTTAAATTGTTCTTTTTTT
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