BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALNS (Iron-binding protein iscA OS=Salmonella newport (strain SL254) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNIFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPMA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_PECCP (Iron-binding protein iscA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+E+A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N    D+V E  G  ++ D KSL++L G +LD+    +  GF F NPN++  CGCG+SF
Sbjct:    2 SISLSESAAQRVSAFIANRGKGLGLRLGVRTSGCSGMAYVLEFVDDLN--DGDTVFEDKGIKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNSSGECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_PSEPF (Iron-sulfur cluster insertion protein erpA OS=Pseudomonas fluorescens (strain Pf0-1) GN=erpA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A+  T+ A   +  +  E   D L LR+ V  GGCSG  Y   F+   +   DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNAT TCGCG SF+
Sbjct:   10 ALQFTQGAAHKVKSLVDEEGNDRLKLRVFVTGGGCSGFQYGFTFDE--DVAEDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNATTTCGCGSSFS 115          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERE8 (Iron-binding protein iscA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNNRGKGLGLRLGVRTSGCSGMAYILEFVDEMN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISA1_SCHPO (Iron sulfur assembly protein 1 OS=Schizosaccharomyces pombe GN=isa1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  157 KPAILLTENALKHLNKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPD--DSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            K  I LT  A++HL KM+S  S +   LRIGVKQ GC+G +Y++E+  +    PD  D +++ DG  I+   ++LL + G  +DY D  +   F F NPN   TCGCG+SF+
Sbjct:   80 KNVIKLTPLAVEHLKKMQSSASMKGKMLRIGVKQKGCAGQAYSLEYIEK----PDKFDEIVKQDGISIIVARRALLQIIGSVMDYRDDDLQSRFIFSNPNVKSTCGCGESFS 187          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_SHELP (Iron-sulfur cluster insertion protein erpA OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=erpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  148 EELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            E+  P       A K    +  E+++ L LR+ V  GGCSG  Y   F+ + N    D  +E  G  +V DP SL +L G ++DY+  L G  F+ KNPNAT TCGCG SF+
Sbjct:    6 EDTMPIRFTDAAAAKVKTLLEEEQNDALKLRVYVTGGGCSGFQYGFTFDEKVNE--GDFTVEKQGVQLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFS 115          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_PSEPK (Iron-sulfur cluster insertion protein erpA OS=Pseudomonas putida (strain KT2440) GN=erpA PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K  N +  E +E L LR+ V  GGCSG  Y   F+   +   DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNA  TCGCG SF+
Sbjct:   18 AQKVKNLVNEEGNERLKLRVFVTGGGCSGFQYGFTFDE--DVAEDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNAATTCGCGSSFS 115          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_PSEFS (Iron--sulfur cluster insertion protein erpA OS=Pseudomonas fluorescens (strain SBW25) GN=erpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A+  T  A   +  +  E   D L LR+ V  GGCSG  Y   F+   +   DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNAT TCGCG SF+
Sbjct:   10 ALQFTHGAAHKVKSLVDEEGNDRLKLRVFVTGGGCSGFQYGFTFDE--DVADDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNATTTCGCGSSFS 115          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_PSEF5 (Iron-sulfur cluster insertion protein erpA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=erpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A+  T+ A   +  +  E   D L LR+ V  GGCSG  Y   F+       DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNAT TCGCG SF+
Sbjct:   10 ALQFTQGAAHKVKTLVDEEGNDRLKLRVFVTGGGCSGFQYGFTFDEEV--AEDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNATTTCGCGSSFS 115          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_POLSJ (Putative iron-sulfur cluster insertion protein erpA OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=erpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAA 486
            TE   P +     A K    +  E + DL LR+ V+ GGCSG  Y   F+   N   DD+ +  +G  ++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+A
Sbjct:   10 TEMPAPFVFTDSAAAKVAELIAEEGNPDLKLRVFVQGGGCSGFQYGFTFDEITNE--DDTTMTKNGVSLLIDAMSYQYLVGAEIDYKDDLEGAQFVIKNPNATSTCGCGSSFSA 121          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ISCA_SALNS1.148e-1642.45Iron-binding protein iscA OS=Salmonella newport (s... [more]
ISCA_PECCP1.148e-1640.57Iron-binding protein iscA OS=Pectobacterium caroto... [more]
ERPA_PSEPF1.148e-1640.74Iron-sulfur cluster insertion protein erpA OS=Pseu... [more]
ISCA_YERE81.500e-1638.68Iron-binding protein iscA OS=Yersinia enterocoliti... [more]
ISA1_SCHPO1.500e-1641.96Iron sulfur assembly protein 1 OS=Schizosaccharomy... [more]
ERPA_SHELP1.500e-1640.18Iron-sulfur cluster insertion protein erpA OS=Shew... [more]
ERPA_PSEPK1.959e-1643.00Iron-sulfur cluster insertion protein erpA OS=Pseu... [more]
ERPA_PSEFS1.959e-1640.74Iron--sulfur cluster insertion protein erpA OS=Pse... [more]
ERPA_PSEF51.959e-1640.74Iron-sulfur cluster insertion protein erpA OS=Pseu... [more]
ERPA_POLSJ1.959e-1640.35Putative iron-sulfur cluster insertion protein erp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
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