BQ623290 | Citrus Genome Database

Overview


Name	BQ623290
Unique Name	BQ623290
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	642

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1913	contig	Csv1_Contig1913:68..694.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALTY (Iron-binding protein iscA OS=Salmonella typhimurium GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALTI (Iron-binding protein iscA OS=Salmonella typhi GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALSV (Iron-binding protein iscA OS=Salmonella schwarzengrund (strain CVM19633) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALPK (Iron-binding protein iscA OS=Salmonella paratyphi A (strain AKU_12601) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALPC (Iron-binding protein iscA OS=Salmonella paratyphi C (strain RKS4594) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALPB (Iron-binding protein iscA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALPA (Iron-binding protein iscA OS=Salmonella paratyphi A GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALHS (Iron-binding protein iscA OS=Salmonella heidelberg (strain SL476) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALG2 (Iron-binding protein iscA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALEP (Iron-binding protein iscA OS=Salmonella enteritidis PT4 (strain P125109) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

The following BLAST results are available for this feature:

BLAST of BQ623290 vs. ExPASy Swiss-Prot

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345


Match Name	E-value	Identity	Description
ISCA_SALTY	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella typhimuriu...	[more]
ISCA_SALTI	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella typhi GN=i...	[more]
ISCA_SALSV	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella schwarzeng...	[more]
ISCA_SALPK	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella paratyphi ...	[more]
ISCA_SALPC	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella paratyphi ...	[more]
ISCA_SALPB	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella paratyphi ...	[more]
ISCA_SALPA	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella paratyphi ...	[more]
ISCA_SALHS	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella heidelberg...	[more]
ISCA_SALG2	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella gallinarum...	[more]
ISCA_SALEP	3.947e-17	42.45	Iron-binding protein iscA OS=Salmonella enteritidi...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA