BQ623290 | Citrus Genome Database

Overview


Name	BQ623290
Unique Name	BQ623290
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	642

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1913	contig	Csv1_Contig1913:68..694.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SHIBS (Iron-binding protein iscA OS=Shigella boydii serotype 4 (strain Sb227) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ESCF3 (Iron-binding protein iscA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ECOSM (Iron-binding protein iscA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ECOSE (Iron-binding protein iscA OS=Escherichia coli (strain SE11) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLU (Iron-binding protein iscA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLI (Iron-binding protein iscA OS=Escherichia coli (strain K12) GN=iscA PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLC (Iron-binding protein iscA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ECOL6 (Iron-binding protein iscA OS=Escherichia coli O6 GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ECOL5 (Iron-binding protein iscA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ECOK1 (Iron-binding protein iscA OS=Escherichia coli O1:K1 / APEC GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1

Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

The following BLAST results are available for this feature:

BLAST of BQ623290 vs. ExPASy Swiss-Prot

BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345


Match Name	E-value	Identity	Description
ISCA_SHIBS	5.155e-17	42.45	Iron-binding protein iscA OS=Shigella boydii serot...	[more]
ISCA_ESCF3	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia fergusoni...	[more]
ISCA_ECOSM	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECOSE	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECOLU	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia coli O17:...	[more]
ISCA_ECOLI	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECOLC	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECOL6	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia coli O6 G...	[more]
ISCA_ECOL5	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia coli O6:K...	[more]
ISCA_ECOK1	5.155e-17	42.45	Iron-binding protein iscA OS=Escherichia coli O1:K...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA