BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_RHIEC (30S ribosomal protein S11 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAH+ ++FN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+ +L +++               +SALRAL  +G  I  I DVTPIP +  R
Sbjct:   19 GVAHVNSTFNNTMITITDAQGNAIAWSSAGAKGFKGSR-KSTPFAAQIAAEDCAKKAQEHGMKSLEVEV--------CGPGSGRESALRALQAAGFMITSIRDVTPIPHNGCR 122
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_RHIE6 (30S ribosomal protein S11 OS=Rhizobium etli (strain CIAT 652) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAH+ ++FN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+ +L +++               +SALRAL  +G  I  I DVTPIP +  R
Sbjct:   19 GVAHVNSTFNNTMITITDAQGNAIAWSSAGAKGFKGSR-KSTPFAAQIAAEDCAKKAQEHGMKSLEVEV--------CGPGSGRESALRALQAAGFMITSIRDVTPIPHNGCR 122
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PROMH (30S ribosomal protein S11 OS=Proteus mirabilis (strain HI4320) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE GI  L + ++              +S +RAL  +G +I  I DVTPIP +  R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEYGIKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIPHNGCR 122
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PHOLL (30S ribosomal protein S11 OS=Photorhabdus luminescens subsp. laumondii GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE GI  L + ++              +S +RAL  +G +I  I DVTPIP +  R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEYGIKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIPHNGCR 122
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PELPD (30S ribosomal protein S11 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAHI A+FN+T I + D +G       +G    K  R +S+P+AA +AA+D +++ +E G+  + + ++              +SALRAL  +G  I  I+DVTPIP +  R
Sbjct:   21 GVAHIHATFNNTMITIADTAGNVLAWSTSGAKGFKGSR-KSTPFAAQVAAEDCAKKAQEHGLRNVEVYVKGPGSGR--------ESALRALQAAGFNISFIKDVTPIPHNGCR 124
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PECCP (30S ribosomal protein S11 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE GI  L + ++              +S +RAL  +G +I  I DVTPIP +  R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEYGIKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIPHNGCR 122
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_OCHA4 (30S ribosomal protein S11 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAH+ ++FN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+ +L +++               +SALRAL  +G  I  I DVTPIP +  R
Sbjct:   19 GVAHVNSTFNNTMITITDAQGNAIAWSSAGAQGFKGSR-KSTPFAAQIAAEDCAKKAQEHGMRSLEVEV--------CGPGSGRESALRALQAAGFVITSIRDVTPIPHNGCR 122
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_MESSB (30S ribosomal protein S11 OS=Mesorhizobium sp. (strain BNC1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAH+ ++FN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+  L +++               +SALRAL  +G  I  I DVTPIP +  R
Sbjct:   19 GVAHVNSTFNNTMITITDAQGNAIAWSSAGAQGFKGSR-KSTPFAAQVAAEDCARKAQEHGMRTLEVEVSGPGSGR--------ESALRALQAAGFTITSIRDVTPIPHNGCR 122
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_KLEP7 (30S ribosomal protein S11 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE GI  L + ++              +S +RAL  +G +I  I DVTPIP +  R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEYGIKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIPHNGCR 122
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_ERWCT (30S ribosomal protein S11 OS=Erwinia carotovora subsp. atroseptica GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE GI  L + ++              +S +RAL  +G +I  I DVTPIP +  R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEYGIKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIPHNGCR 122
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS11_RHIEC5.874e-1135.4030S ribosomal protein S11 OS=Rhizobium etli (strai... [more]
RS11_RHIE65.874e-1135.4030S ribosomal protein S11 OS=Rhizobium etli (strai... [more]
RS11_PROMH5.874e-1136.2830S ribosomal protein S11 OS=Proteus mirabilis (st... [more]
RS11_PHOLL5.874e-1136.2830S ribosomal protein S11 OS=Photorhabdus luminesc... [more]
RS11_PELPD5.874e-1135.4030S ribosomal protein S11 OS=Pelobacter propionicu... [more]
RS11_PECCP5.874e-1136.2830S ribosomal protein S11 OS=Pectobacterium caroto... [more]
RS11_OCHA45.874e-1135.4030S ribosomal protein S11 OS=Ochrobactrum anthropi... [more]
RS11_MESSB5.874e-1135.4030S ribosomal protein S11 OS=Mesorhizobium sp. (st... [more]
RS11_KLEP75.874e-1136.2830S ribosomal protein S11 OS=Klebsiella pneumoniae... [more]
RS11_ERWCT5.874e-1136.2830S ribosomal protein S11 OS=Erwinia carotovora su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
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