BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_HALSA (30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+AH+ ASFN+T + VTD +G ETL + +GG  VK +RDE+SPYAAM  A+ +++   + GI  +H+++R             AQ+A+RALAR+G++IGRIEDVTPIP D TR
Sbjct:    7 WGIAHVHASFNNTIMTVTDQTGAETLAKSSGGSVVKQNRDEASPYAAMQMAEQLAEEVLDQGIEKVHVRVRGPGGNLQRSPGPGAQAAIRALARAGLEIGRIEDVTPIPHDGTR 120          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METS5 (30S ribosomal protein S11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps11p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.208e-25
Identity = 59/115 (51.30%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +G+A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA   +    + G+ A+HIK+RA            AQ A+R+LARSG  IGRIEDVTPIP D+ RR
Sbjct:    9 WGLARIYASQNNTIITITDITGAEVISKASGGMMVKADREKPSPYAAMLAANKAASDALDKGLMAIHIKVRAPGGAGPKTPGPGAQPAIRSLARSGFIIGRIEDVTPIPHDTIRR 123          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METS3 (30S ribosomal protein S11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.148e-25
Identity = 55/115 (47.83%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +G+A+I++S+N+T I VTD++G ET+ + +GG  V+ADR ++SP+AAM AA  ++   KE G   LHI++RA            AQ+ +RALAR+G+KIG+IED+TPIP D T R
Sbjct:    7 WGIANIYSSYNNTIITVTDITGAETISQWSGGKVVRADRQQASPFAAMAAATRIADDAKEKGFVGLHIRVRAPGGNGHRSPGPGAQATIRALARAGIKIGKIEDITPIPHDGTGR 121          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PYRCJ (30S ribosomal protein S11P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D+ R
Sbjct:   18 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDTIR 131          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_THEPD (30S ribosomal protein S11P OS=Thermofilum pendens (strain Hrk 5) GN=rps11p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   51 SSAAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            S  A  RR+TRE +                 G+A I+AS+N+T IH+TDLSG ET+   +GGM  KADRD+ SP+AAM AA   ++   + GI  +H+K++A            A  A+RAL R+G+ + RIEDVTP+PTDS R+
Sbjct:   15 SGKAEERRETREKQVRGDV------------GIAWIYASYNNTIIHITDLSGAETIAFASGGMVAKADRDKPSPWAAMQAAARAAKIALDKGIRVVHVKIKAPGGYGPKTPGPGAGPAIRALVRAGLMVDRIEDVTPLPTDSIRK 147          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_SULAC (30S ribosomal protein S11P OS=Sulfolobus acidocaldarius GN=rps11p PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 59/115 (51.30%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +G A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA   +    + GI+A+HIK+RA            AQ A+RALAR+G  IGRIEDVTP+P D+ RR
Sbjct:    9 WGNARIYASQNNTIITITDITGAEIISKASGGMVVKADREKPSPYAAMLAANKAANDAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPLPHDTIRR 123          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PYRIL (30S ribosomal protein S11P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps11p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D+ R
Sbjct:   16 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLIIGRIEDVTPIPHDTIR 129          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_HALMA (30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  132 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            E ++G+AH+ ASFN+T I +TD +G ETL + +GG  VK +RDE+SPYAAM  A+ V+++  + G+  + +++R             AQ+ +RALAR+G++IGRIEDVTP P D TR
Sbjct:    6 EDIWGIAHVHASFNNTIITITDQTGAETLAKSSGGTVVKQNRDEASPYAAMQMAEVVAEKALDRGVEGVDVRVRGPGGNLQTSPGPGAQATIRALARAGLEIGRIEDVTPTPHDGTR 122          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_KORCO (30S ribosomal protein S11P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.080e-24
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            GVAHI++SFNDT +H+TD++G ETL R +GGM V ADR E SPYAA+ AA   ++  +  GIT L +K+RA            A +A+R L+RS + + R+EDVTPIP D  RR
Sbjct:   10 GVAHIYSSFNDTIVHITDITGAETLARYSGGMFVDADRLEGSPYAALKAAMAAAKEAQRKGITHLIVKVRAPGGIKSRIPGPGATAAIRGLSRSQLTLIRVEDVTPIPHDGCRR 123          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PYRAR (30S ribosomal protein S11P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps11p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 57/114 (50.00%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D  R
Sbjct:   15 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLAMARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDIIR 128          
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS11_HALSA2.457e-2549.1230S ribosomal protein S11P OS=Halobacterium salina... [more]
RS11_METS53.208e-2551.3030S ribosomal protein S11P OS=Metallosphaera sedul... [more]
RS11_METS37.148e-2547.8330S ribosomal protein S11P OS=Methanobrevibacter s... [more]
RS11_PYRCJ9.335e-2550.8830S ribosomal protein S11P OS=Pyrobaculum calidifo... [more]
RS11_THEPD1.219e-2442.7630S ribosomal protein S11P OS=Thermofilum pendens ... [more]
RS11_SULAC1.219e-2451.3030S ribosomal protein S11P OS=Sulfolobus acidocald... [more]
RS11_PYRIL1.219e-2450.8830S ribosomal protein S11P OS=Pyrobaculum islandic... [more]
RS11_HALMA1.219e-2446.1530S ribosomal protein S11P OS=Haloarcula marismort... [more]
RS11_KORCO2.080e-2450.0030S ribosomal protein S11P OS=Korarchaeum cryptofi... [more]
RS11_PYRAR6.051e-2450.0030S ribosomal protein S11P OS=Pyrobaculum arsenati... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
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