BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:216..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.537e-24
Identity = 68/189 (35.98%), Postives = 104/189 (55.03%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTH-LFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS-AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            R++QVEYA  A++ AG T +G+  KD + +  +KK   KLLD  TS++  +F I +++     G+T+DA  L+  AR  +  F ++Y   MPV+ L   I D  Q YTQ+  +RP GV  +    D   G +L++ DP+G+F G KATS  G   Q A + L    K  P  + +E +Q A+  L   +
Sbjct:   17 RVYQVEYAMTAIRHAGAT-VGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYK--PDISLKEALQLALKVLTKTM 202          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.537e-24
Identity = 64/183 (34.97%), Postives = 105/183 (57.38%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+E+A  AV  +G TS+G++  + V + T+KK+P  L+D  SV  +  +T  +G + +GM  D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  +V   D++ GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+
Sbjct:   18 KLVQIEHALTAV-GSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.314e-24
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+EYA  AV A G  S+G++  + V + T+KK    L D  SV  + PITK++GL+ +GM  D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+
Sbjct:   18 KLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.314e-24
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+EYA  AV A G  S+G++  + V + T+KK    L D  SV  + PITK++GL+ +GM  D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+
Sbjct:   18 KLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.314e-24
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+EYA  AV A G  S+G++  + V + T+KK    L D  SV  + PITK++GL+ +GM  D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+
Sbjct:   18 KLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.314e-24
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+EYA  AV A G  S+G++  + V + T+KK    L D  SV  + PITK++GL+ +GM  D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+
Sbjct:   18 KLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.328e-24
Identity = 60/183 (32.79%), Postives = 100/183 (54.64%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 548
            RL+QVEYA +++  AG T+IG+   D + +  ++KV   LL+  TS   L+ +   + +   G+TADA  L+  AR  A  +   Y  ++PV++L + ++D  Q YTQH  +RP GV  +    D+  G +L+  +P+G++ G KA S G     A   L+   K+D      + ++ A+ TL
Sbjct:   18 RLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDD--MKVDDAIELALKTL 197          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 5.653e-24
Identity = 64/186 (34.41%), Postives = 101/186 (54.30%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +A+K  G T++GVRG+D V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   T   T++  I  L  V+Q
Sbjct:   16 LFQVEYAQEAIKK-GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.653e-24
Identity = 65/186 (34.95%), Postives = 101/186 (54.30%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++GVRG+D V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   T   T++  I  L  V+Q
Sbjct:   16 LFQVEYAQEAVKK-GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.653e-24
Identity = 65/186 (34.95%), Postives = 102/186 (54.84%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++GVRGK+ V +  +KK   KL D  +V  +  + + + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   T   T++  I  L  V+Q
Sbjct:   16 LFQVEYAQEAVKK-GSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQ 200          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA4_DICDI2.537e-2435.98Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA2B_ARATH2.537e-2434.97Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2_RAT3.314e-2437.16Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE3.314e-2437.16Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN3.314e-2437.16Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN3.314e-2437.16Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA4_YEAST4.328e-2432.79Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA7_PONAB5.653e-2434.41Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA7_HUMAN5.653e-2434.95Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA7B_XENLA5.653e-2434.95Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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