BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:216..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.805e-23
Identity = 65/190 (34.21%), Postives = 106/190 (55.79%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY---TQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +A+K  G T+IG++ K+ V +  +K++   LL+ +SV  +  I +++G   +G+ ADARTLV+ AR E    RF YG  M V+   + + D +  +    + +  RP GV  ++   DE  GP L+  DP+G F+     + G   + A + L+++   D   T QE    A+S L+ V++
Sbjct:   20 RLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKD--LTLQEAETIALSILKQVME 205          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.805e-23
Identity = 70/184 (38.04%), Postives = 98/184 (53.26%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+EYA  AVK  G  S+G+R KD V + T+        D   V     I+K++G + +GM  D R LV++AR  A E+   YG EMP   L   IA   Q YTQ   +RP G   ++   D+  G P LF+CDP+G +F  KAT+ G  +  A  FLEK+     A    + + TA+ TL+
Sbjct:   17 KLMQIEYALNAVKN-GQPSVGLRAKDGVVLATENVGSVLTDDQPKVEQ---ISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE--ALELDDGIHTALLTLR 194          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.805e-23
Identity = 64/187 (34.22%), Postives = 102/187 (54.55%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +AVK  G   +G+R +    +    K   +L  H     +F +  + G+   G+TAD R L +  R E     F Y   +PV  LA  +ADK+QV TQ ++ RP GV  +V  +DE  G  L+   P+G++F ++A + G + Q A  FLE++ +    +T ++ ++ A+S ++  LQ
Sbjct:   18 RLFQVEYAMEAVKQ-GSACVGLRSRTHAVLAAANKAASELSSHQR--KVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.664e-23
Identity = 65/187 (34.76%), Postives = 98/187 (52.41%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K       +ET++ AI  L  V++
Sbjct:   17 LFQVEYALEAVRK-GNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG---KETIKLAIRALLEVVE 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.664e-23
Identity = 65/187 (34.76%), Postives = 98/187 (52.41%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K       +ET++ AI  L  V++
Sbjct:   17 LFQVEYALEAVRK-GNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG---KETIKLAIRALLEVVE 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.785e-23
Identity = 64/187 (34.22%), Postives = 104/187 (55.61%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +AVK  G  +IG+R +  V +    K   +L  H     +F +  ++G+   G+TAD R L +  R E+    F Y   +PV  L   +ADK+QV TQ ++ RP GV  +V  +DE  G  L+   P+G++F ++A + G + Q A  +LE+K ++    + ++ ++ AI  ++  LQ
Sbjct:   18 RLFQVEYAMEAVKQ-GSAAIGLRSRSHVVLACVNKAQSELSSHQR--KIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.163e-23
Identity = 58/161 (36.02%), Postives = 96/161 (59.63%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            R+FQ++YA KAV+ +G T IG+RGKD+V +  +K +  KL +  +   +F I K +G+   G+ AD   +   AR EAA +R ++   +P+  L   +A     YT ++ +RP G+  ++ S DE  GP+L+K +P+G  FG+ A ++G  +Q A   +EK
Sbjct:   20 RVFQIDYASKAVEKSG-TVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEK 179          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 64/186 (34.41%), Postives = 99/186 (53.23%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +      EK   ++   T   T++  I  L  V+Q
Sbjct:   16 LFQVEYAQEAVKK-GSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 59/185 (31.89%), Postives = 102/185 (55.14%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            LFQVEYA +AVK  G T++GVRGKD + +  +KK    L D  ++  +  I  ++ L   G++ADAR LV +AR E   ++      + V  ++++IA+  Q +TQ    RP G+  ++   D +  PRLFK +P+G ++ + A + G  E+    +LE++   +       T++  + +L  V+
Sbjct:   17 LFQVEYAQEAVKK-GSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVV 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 64/187 (34.22%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEEC-GPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S+  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K+      +ET++ AI  L  V++
Sbjct:   17 LFQVEYALEAVRK-GNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKDTSG---KETIKLAIRALLEVVE 199          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA5_SOYBN2.805e-2334.21Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA2_CAEEL2.805e-2338.04Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA1_ORYSJ2.805e-2334.22Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA7B_ORYSJ3.664e-2334.76Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI3.664e-2334.76Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA1B_ARATH4.785e-2334.22Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA3_DROME8.163e-2336.02Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA7_CHICK1.066e-2234.41Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_CAEEL1.066e-2231.89Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA7A_ORYSJ1.066e-2234.22Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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