BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.222e-22
Identity = 40/110 (36.36%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 IDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            +DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T
Sbjct:  400 VDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQAT 506          

HSP 2 Score: 45.8246 bits (107), Expect = 1.222e-22
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  330 LAKQMVTTFGMS-EIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA 605
            +A+ MVT FGMS ++G  ++  GS+ GD  +   M  +   S ++A +ID  V++L + A+  A   +   R+ +D +   LLEKET+   E  +
Sbjct:  508 IARSMVTEFGMSSKLG--AVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELES 600          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.222e-22
Identity = 40/110 (36.36%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 IDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            +DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T
Sbjct:  400 VDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQAT 506          

HSP 2 Score: 45.8246 bits (107), Expect = 1.222e-22
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  330 LAKQMVTTFGMS-EIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA 605
            +A+ MVT FGMS ++G  ++  GS+ GD  +   M  +   S ++A +ID  V++L + A+  A   +   R+ +D +   LLEKET+   E  +
Sbjct:  508 IARSMVTEFGMSSKLG--AVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELES 600          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.222e-22
Identity = 40/110 (36.36%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 IDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            +DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T
Sbjct:  400 VDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQAT 506          

HSP 2 Score: 45.8246 bits (107), Expect = 1.222e-22
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  330 LAKQMVTTFGMS-EIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA 605
            +A+ MVT FGMS ++G  ++  GS+ GD  +   M  +   S ++A +ID  V++L + A+  A   +   R+ +D +   LLEKET+   E  +
Sbjct:  508 IARSMVTEFGMSSKLG--AVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELES 600          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.592e-22
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 2
Query:    5 DRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            DR++ G    G  + D ++    AYHE GH +    T    P+ KVT++PRGQ+ G T  +P  D   ++K Q+ A +   +GGR AEE+IFG  +VTTGAA DL + T
Sbjct:  437 DRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQLTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKAT 545          

HSP 2 Score: 41.5874 bits (96), Expect = 1.592e-22
Identity = 27/96 (28.12%), Postives = 49/96 (51.04%), Query Frame = 3
Query:  315 SRSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            S++  LA QMV  FGMS+           +   ++++   + ++ + AE IDA + R+   +Y+ A   +   ++    + E LLE ET+S DE +
Sbjct:  542 SKATQLAVQMVKVFGMSDKVGLRDFTAQDNESALVKV---SDLAPQTAELIDAEINRVLQESYKRAKVILETKKKEHQLLAEALLEYETLSADEVK 634          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.066e-22
Identity = 39/110 (35.45%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 IDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            +DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D+++ T
Sbjct:  400 VDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEKAT 506          

HSP 2 Score: 46.595 bits (109), Expect = 2.066e-22
Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  330 LAKQMVTTFGMS-EIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            +A+ MVT FGMS ++G  ++  GS+ GD  +   M  +   S ++A DID  V++L + A+  A   +   R+ +D +   LLEKET+   E
Sbjct:  508 IARSMVTEFGMSSKLG--AVRYGSEHGDPFLGRTMGTQADYSHEVARDIDDEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPE 597          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.698e-22
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAE+V     E++TGA+ DL++ T
Sbjct:  415 VERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFL--QEISTGASNDLERAT 522          

HSP 2 Score: 47.7506 bits (112), Expect = 2.698e-22
Identity = 24/95 (25.26%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            R+  + K MV+ +GMS++    +++  ++  +     +    SEK+AE++D+ +K L +  Y      + + ++AI+ ++  L EKE ++G+  R
Sbjct:  520 RATDIIKGMVSYYGMSDVSGLMVLEKQRNSFLGGGFGSGREFSEKMAEEMDSFIKNLLEERYVHVKQTLSDYKDAIEVMVNELFEKEVITGERVR 614          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.511e-22
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAE+V     E++TGA+ DL++ T
Sbjct:  409 VERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFL--EEISTGASNDLERAT 516          

HSP 2 Score: 47.3654 bits (111), Expect = 3.511e-22
Identity = 25/95 (26.32%), Postives = 52/95 (54.74%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            R+  + K MV+ +GMS +    +++  ++  +     +    SEK AE++D  +K L +  Y+     + + REAI+ +++ L +KE ++G+  R
Sbjct:  514 RATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYKHVKQTLSDYREAIEIMVKELFDKEVITGERVR 608          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.533e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T
Sbjct:  390 DKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVAT 497          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.533e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T
Sbjct:  390 DKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVAT 497          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.533e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T
Sbjct:  390 DKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVAT 497          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH_MYCTU1.222e-2236.36Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA1.222e-2236.36Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO1.222e-2236.36Cell division protease ftsH homolog OS=Mycobacteri... [more]
YME1_CAEEL1.592e-2241.28Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
FTSH_MYCLE2.066e-2235.45Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_HELFE2.698e-2241.82Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPY3.511e-2241.82Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_SHIFL1.533e-2148.62Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI1.533e-2148.62Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO571.533e-2148.62Cell division protease ftsH OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
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