BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:527..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T
Sbjct:  390 DKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVAT 497          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+TGA+ D++  T
Sbjct:  390 DKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVAT 497          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E    VM+D + +S  AYHE GH I G L P HDP  KVT++PRGQA G+T+F+P  D   IS+Q+L ++I    GGR AEE+I+G   V+TGA  D++  T
Sbjct:  390 DKIMMGSERRSMVMSDFQKES-TAYHEAGHVIIGRLVPDHDPAHKVTIIPRGQALGITFFLPESDILSISRQKLESQISTLYGGRLAEEIIYGSQNVSTGAFNDIKVAT 497          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I  G E    VMT+ K K   AYHE GH I G L P HDP  KVT++PRG+A G+T+F+P DD   I+K +L ++I    GGR AEE+I+G   V+TGA  D++  T
Sbjct:  390 DKITMGSERRSMVMTE-KQKESTAYHEAGHVIVGRLVPEHDPAHKVTIIPRGRALGVTFFLPKDDVLSINKNKLESQISTLYGGRLAEEIIYGVNNVSTGAHNDIKVAT 497          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.228e-21
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            DRI+ G E    V++D +S+ L AYHE GHA+    T G  PV K T+VPRG+  G+   +P  D T  S++Q+ A +   + GR AEE+IFG  EVT+GA+ D Q  T
Sbjct:  458 DRIMMGSERKSAVISD-ESRKLTAYHEGGHALVAIHTEGARPVHKATIVPRGRTLGMVSQLPEKDETSFSRKQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNAT 565          

HSP 2 Score: 31.187 bits (69), Expect = 8.228e-21
Identity = 24/91 (26.37%), Postives = 43/91 (47.25%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+ MVT +GMS+   +   +    G          SMS +    I+  VK L + AY  A + +  + +    + + LLE ET++G + +
Sbjct:  567 MARAMVTKYGMSKQLGFVSYNYEDDG---------KSMSTETRLLIEQEVKSLLENAYNNAKTILTKHSKEHHVLAQALLEHETLTGAQIK 648          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.350e-20
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG   +TTGA  DL+++T
Sbjct:  549 IERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVT 654          

HSP 2 Score: 34.6538 bits (78), Expect = 2.350e-20
Identity = 23/88 (26.14%), Postives = 43/88 (48.86%), Query Frame = 3
Query:  333 AKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            A   +  FGM+E       D  + GD+++        SE  A  ID  V+ L + AY+  ++ +   +  ++K+  +LLEKE +  ++
Sbjct:  657 AYAQIVQFGMNEKVGQISFDLPRQGDMVLE----KPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKND 740          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.056e-20
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+D+  L++K+QLF      LGGRAAEEV+ G  +++TGA  DL+++T
Sbjct:  560 IDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNDN-LLMTKEQLFDMTCMTLGGRAAEEVLIG--KISTGAQNDLEKVT 666          

HSP 2 Score: 35.039 bits (79), Expect = 3.056e-20
Identity = 17/51 (33.33%), Postives = 30/51 (58.82%), Query Frame = 3
Query:  444 SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            S + A  ID  V+    +AYE  +  I+ +++ + +I E+LLEKE +  D+
Sbjct:  701 SSQTASIIDTEVREWVAKAYEKTVELIKQHKDQVAQIAELLLEKEVLHQDD 751          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.777e-20
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 2
Query:    5 DRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I  G E    +MTD K K   AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D   IS++QL +++     GR AE++I+G   ++TGA+ D++  T
Sbjct:  135 DKINMGPERRTMIMTD-KQKESTAYHEAGHAIVGYLVPEHDPVHKVTIIPRGRALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVAT 242          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.777e-20
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 2
Query:    5 DRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I  G E    +MTD K K   AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D   IS++QL +++     GR AE++I+G   ++TGA+ D++  T
Sbjct:  389 DKINMGPERRTMIMTD-KQKESTAYHEAGHAIVGYLVPEHDPVHKVTIIPRGRALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVAT 496          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.173e-20
Identity = 42/113 (37.17%), Postives = 70/113 (61.95%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITWFGQ 337
            I+R+ AG+E  + +   + K+ VA+HE GHA+ G      DP+ KV+++PR QA G   ++P D   L+S+ Q+  ++   L GR +EE+ FG  ++T+GA+ D Q++T   Q
Sbjct:  536 IERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQ-YLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQ 647          

HSP 2 Score: 36.1946 bits (82), Expect = 5.173e-20
Identity = 23/89 (25.84%), Postives = 45/89 (50.56%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            +A+  VT +GMS         G+ +  +  R   +   SE  A+ ID  +++L   AYE     +  +++ ++ I + LL+KE ++ +E
Sbjct:  645 MAQAYVTQYGMSPTV------GTIAYPIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQRLLQKEVITYNE 727          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH_SALTY2.002e-2148.62Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI2.002e-2148.62Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_BUCAP2.615e-2148.62Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCBP7.609e-2148.62Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH4_ORYSJ8.228e-2144.95Cell division protease ftsH homolog 4, mitochondri... [more]
AFG32_HUMAN2.350e-2040.37AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
FTSH3_ORYSJ3.056e-2043.64Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH2_HAEIN3.777e-2046.79Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FTSH1_HAEIN3.777e-2046.79Cell division protease ftsH homolog 1 OS=Haemophil... [more]
RCA1_SCHPO5.173e-2037.17Mitochondrial respiratory chain complexes assembly... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
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