BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:527..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.722e-20
Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QL  R+   LGGR +EE+ FG   +TTGA  DL+++T
Sbjct:  550 IERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPREQ-YLYTREQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVT 655          

HSP 2 Score: 34.6538 bits (78), Expect = 6.722e-20
Identity = 23/88 (26.14%), Postives = 43/88 (48.86%), Query Frame = 3
Query:  333 AKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            A   +  FGM+E       D  + GD+++        SE  A  ID  V+ L + AY+  ++ +   +  ++K+  +LLEKE +  ++
Sbjct:  658 AYAQIVQFGMNEKVGQISFDLPRQGDMVLE----KPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKND 741          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.136e-19
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDRI+ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAEEV+ G   ++TGA  DL+++T
Sbjct:  575 IDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEEVLIG--RISTGAQNDLEKVT 681          

HSP 2 Score: 34.6538 bits (78), Expect = 1.136e-19
Identity = 18/51 (35.29%), Postives = 29/51 (56.86%), Query Frame = 3
Query:  444 SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            S + A  ID  V+    +AY+  +  I  ++E + KI E+LLEKE +  D+
Sbjct:  716 SNQTASIIDDEVREWVGKAYKKTVELITEHKEQVAKIAEMLLEKEVLHQDD 766          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.504e-19
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    5 DRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E    V+TD   K+  A+HE GHAI    T G  P+ K T++PRG+A G+T+ +P  D   I+K++  AR+   +GG+ AEE+I+G    T+G   DLQ  T
Sbjct:  516 DKILMGAERKTMVLTDAARKA-TAFHEAGHAIMAKYTNGATPLYKATILPRGRALGITFQLPEMDKVDITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSAT 623          

HSP 2 Score: 33.8834 bits (76), Expect = 2.504e-19
Identity = 25/91 (27.47%), Postives = 46/91 (50.55%), Query Frame = 3
Query:  327 GLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            G A+ MVT +GMS ++GP +L +  +S    +R +A N + E L +  + A + L+ +  E            + ++ + L+E ET+   E
Sbjct:  624 GTARAMVTQYGMSDDVGPVNLSENWESWSNKIRDIADNEVIELLKDSEERARRLLTKKNVE------------LHRLAQGLIEYETLDAHE 702          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.511e-19
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 DRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D    ++ QL A++   +GGR AEE+IFG   +TTGA+ D    T
Sbjct:  517 DKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNAT 624          

HSP 2 Score: 31.9574 bits (71), Expect = 5.511e-19
Identity = 25/91 (27.47%), Postives = 42/91 (46.15%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +AK+MVT FGMSE     +M  S +G           +S +    I+  ++ L   +YE A   ++ + +    + E LL  ET+   E +
Sbjct:  626 IAKRMVTKFGMSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQ 704          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 9.304e-19
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 DRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D    ++ QL A++   +GGR AEE+IFG   +TTGA+ D    T
Sbjct:  575 DKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNAT 682          

HSP 2 Score: 31.187 bits (69), Expect = 9.304e-19
Identity = 25/91 (27.47%), Postives = 42/91 (46.15%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +AK+MVT FGMSE     +M  S +G           +S +    I+  ++ L   +YE A   ++ + +    + E LL  ET+   E +
Sbjct:  684 IAKRMVTKFGMSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQ 762          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.212e-18
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 DRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D     + QL A++   +GGR AEE+IFG   +TTGA+ D    T
Sbjct:  517 DKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNEIRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNAT 624          

HSP 2 Score: 31.9574 bits (71), Expect = 1.212e-18
Identity = 25/91 (27.47%), Postives = 42/91 (46.15%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +AK+MVT FGMSE     +M  S +G           +S +    I+  ++ L   +YE A   ++ + +    + E LL  ET+   E +
Sbjct:  626 IAKRMVTKFGMSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQ 704          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.571e-18
Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G   ++TGA  DL+++T
Sbjct:  567 IDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIG--RISTGAQNDLEKVT 673          

HSP 2 Score: 32.3426 bits (72), Expect = 1.571e-18
Identity = 16/51 (31.37%), Postives = 28/51 (54.90%), Query Frame = 3
Query:  444 SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            S +    ID  V+    +AY+  +  I  ++E + +I E+LLEKE +  D+
Sbjct:  706 SNRTGAMIDEEVREWVGKAYKRTVELIEEHKEQVAQIAELLLEKEVLHQDD 756          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.491e-18
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G  +++TGA  DL+++T
Sbjct:  561 IDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIG--KISTGAQNDLEKVT 667          

HSP 2 Score: 30.8018 bits (68), Expect = 4.491e-18
Identity = 16/51 (31.37%), Postives = 27/51 (52.94%), Query Frame = 3
Query:  444 SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDE 596
            S K    ID  V+    +AYE  +  +  ++  + +I E+LLEKE +  D+
Sbjct:  702 SNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKVAEIAELLLEKEVLHQDD 752          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.283e-17
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    2 IDRIVAGMEGT-VMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++R +AG+E       G  K++VA HEVGHA+ GT    L PG   V+K++++PR G A G T+  P ++D  L+   +L  R+V  LGGRAAEEV+  G  V+TGA  D+++ T
Sbjct:  586 VERSIAGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSG-RVSTGALDDIRRAT 699          

HSP 2 Score: 33.8834 bits (76), Expect = 1.283e-17
Identity = 28/108 (25.93%), Postives = 48/108 (44.44%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIPAEI 638
            R+  +A + V  +G+++ IGP S+   S  G               L + +   VK L   A ++ALS +R N   ++ +   L E E + G+E +    S   P E+
Sbjct:  697 RATDMAYKAVAEYGLNQRIGPISVATLSNGGLDESGGSPWGRDQGHLVDLVQREVKALLQSALDVALSVVRANPTVLEGLGAYLEENEKVEGEELQEWLKSVVAPKEL 804          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.819e-17
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++R +AG+E  +    G  K++VA HE GHA+ GT    L  G   V+K++++PR G A G T+  P S+D  L+   +L  R+V  LGGRAAEEV++ G  ++TGA  D+++ T
Sbjct:  565 VERSIAGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTGGALGFTYIPPTSEDRYLLFIDELLGRLVTLLGGRAAEEVVYSG-RISTGAFDDIRRAT 678          

HSP 2 Score: 33.4982 bits (75), Expect = 2.819e-17
Identity = 28/108 (25.93%), Postives = 49/108 (45.37%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIPAEI 638
            R+  +A + V  +G+++ IGP S+   S  G              KL + +   V  L   A ++ALS +R N + ++ +   L EKE + G+E +        P E+
Sbjct:  676 RATDMAYKAVAEYGLNQKIGPVSVATLSGGGIDDSGGSPWGRDQGKLVDLVQKEVTILLQSALDVALSVVRANPDVLEGLGAQLEEKEKVEGEELQKWLSMVVAPEEL 783          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
AFG32_BOVIN6.722e-2039.45AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
FTSH8_ORYSJ1.136e-1943.64Cell division protease ftsH homolog 8, mitochondri... [more]
YME1_YEAST2.504e-1941.28Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
YMEL1_MOUSE5.511e-1940.74ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN9.304e-1940.74ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
YMEL1_RAT1.212e-1840.74ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
FTSHA_ARATH1.571e-1841.82Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH3_ARATH4.491e-1841.82Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH7_ORYSJ1.283e-1742.61Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH7_ARATH2.819e-1740.87Cell division protease ftsH homolog 7, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
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