BQ623312

Overview
NameBQ623312
Unique NameBQ623312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_ECOLC (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=astD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 484
            H P GV     P+NFP  L    + PAL  GNTI+ K +E TP +   + +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  ++   +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  132 HRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLRRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_ECO7I (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 64/150 (42.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 484
            H P GV     P+NFP  L    + PAL  GNTI+ K +E TP +   + +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  132 HRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEAADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: IOLA_BACHD (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus halodurans GN=iolA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 67/164 (40.85%), Postives = 90/164 (54.88%), Query Frame = 2
Query:   44 PIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 535
            PIGV G I P+NFP+++  W    A+ACGNT VLK +E+TPL A  LA+LF EAGLP GVLN+V G        L  H DV  +SF G     + V + A++   K V    G K+  I+  DAD+D AV     A + + G+ C A +       V +  +EK
Sbjct:  145 PIGVVGGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLANRLAELFTEAGLPEGVLNIVHGAHDVVN-GLLEHPDVKAISFVGSQPVAEYVYKTASQHG-KRVQALAGAKNHSIVMPDADLDGAVNQIVNAAYGSAGERCMAAAVVVAVGEVAEPLMEK 306          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: IOLA3_BACCZ (Methylmalonate semialdehyde dehydrogenase [acylating] 3 OS=Bacillus cereus (strain ZK / E33L) GN=iolA3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 68/180 (37.78%), Postives = 95/180 (52.78%), Query Frame = 2
Query:   44 PIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQE 583
            PIGV G I P+NFP+++  W    A+ACGNT VLK +E+TPL A  L +L  EAGLP GVLN+V+G        L  H  V  +SF G     + V +   + NLK V    G K+  I+  DA+++ A +    A F + G+ C A S   V E + D+ V +    A + +    L E
Sbjct:  144 PIGVIGGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLAAKLVELAEEAGLPKGVLNIVNGAHDVVN-GLLEHKLVKAISFVGSQPVAEYVYKKGTE-NLKRVQALAGAKNHSIVLSDANLELATKQIISAAFGSAGERCMAASVVTVQEEIADQLVGRLVEEANKIVIGNGLDE 321          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: IOLA1_OCEIH (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Oceanobacillus iheyensis GN=iolA1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 65/175 (37.14%), Postives = 98/175 (56.00%), Query Frame = 2
Query:   44 PIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK-AKARAMRRIG 565
            P+GV   I P+NFP+++  W    A+ACGNT VLK++E+TP+ A  L +LF+EAG P GVLN+V G G        +H D++ +SF G     K V +    ++ K V    G K+  ++  D DV++ ++    A F + G+ C A S   V + + DEF+EK  K     R+G
Sbjct:  144 PLGVVAGITPFNFPMMVPLWMFPLAIACGNTFVLKTSERTPILAERLVELFYEAGFPKGVLNLVHG-GKEVVNRFLTHPDIEAVSFVGSEPVAKHVYQ-TGTAHGKRVQALAGAKNHAVVMPDCDVEKTIQGVLGAAFGSSGERCMACSVVAVVDDIADEFLEKLVKETKKLRVG 316          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: GABD1_MYCPA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium paratuberculosis GN=gabD1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 63/166 (37.95%), Postives = 85/166 (51.20%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 535
            ++P+GV   ++PWNFP+       APAL  GN  +LK A   P +ALYLA +    G P G    +     +A   +     V   + TG    G+ V  +A    +KP  LELGG  PFI+   AD+D+AV+ A  A   N GQ C A  R  VH  +YD FV+K
Sbjct:  122 YQPLGVVLAVMPWNFPLWQAVRFAAPALMAGNVGILKHASNVPQSALYLADVITRGGFPEGCFQTLL-VPSSAVERILRDPRVAAATLTGSEPAGQSVAAIAG-DEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDAFVDK 285          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: GABD1_MYCA1 (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium avium (strain 104) GN=gabD1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 63/166 (37.95%), Postives = 85/166 (51.20%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 535
            ++P+GV   ++PWNFP+       APAL  GN  +LK A   P +ALYLA +    G P G    +     +A   +     V   + TG    G+ V  +A    +KP  LELGG  PFI+   AD+D+AV+ A  A   N GQ C A  R  VH  +YD FV+K
Sbjct:  122 YQPLGVVLAVMPWNFPLWQAVRFAAPALMAGNVGILKHASNVPQSALYLADVITRGGFPEGCFQTLL-VPSSAVERILRDPRVAAATLTGSEPAGQSVAAIAG-DEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDTFVDK 285          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_VIBVY (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=astD PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 63/156 (40.38%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYV 502
            H P+GV     P+NFP  L    + PAL  GNT+V K +EQTP T     KL+  AGLP GV+N+V G G   G ALA    +D L FTG  +TG ++    A    K + LE+GG +P +I D   D+D  V     + F + GQ C    R Y+
Sbjct:  132 HRPLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGELAMKLWQAAGLPQGVINLVQG-GKETGIALAESKGIDGLLFTGSANTGHLLHRQFAGQPGKMLALEMGGNNPMVITDHYGDLDATVYTIIQSAFISAGQRCTCARRLYI 286          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_VIBVU (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio vulnificus GN=astD PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 63/156 (40.38%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYV 502
            H P+GV     P+NFP  L    + PAL  GNT+V K +EQTP T     KL+  AGLP GV+N+V G G   G ALA    +D L FTG  +TG ++    A    K + LE+GG +P +I D   D+D  V     + F + GQ C    R Y+
Sbjct:  132 HRPLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGELAMKLWQAAGLPQGVINLVQG-GKETGIALAESKGIDGLLFTGSANTGHLLHRQFAGQPGKMLALEMGGNNPMVITDHYGDLDATVYTIIQSAFISAGQRCTCARRLYI 286          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_SHIFL (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shigella flexneri GN=astD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 64/150 (42.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 484
            H P GV     P+NFP  L    + PAL  GNTI+ K +E TP +   + +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  132 HRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
The following BLAST results are available for this feature:
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_ECOLC9.128e-2442.67N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO7I9.128e-2442.67N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA_BACHD1.192e-2340.85Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA3_BACCZ1.192e-2337.78Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA1_OCEIH1.192e-2337.14Methylmalonate semialdehyde dehydrogenase [acylati... [more]
GABD1_MYCPA1.192e-2337.95Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
GABD1_MYCA11.192e-2337.95Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
ASTD_VIBVY1.192e-2340.38N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBVU1.192e-2340.38N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHIFL1.192e-2342.67N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00403 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00403 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623312 ID=BQ623312; Name=BQ623312; organism=Citrus sinensis; type=EST; length=627bp
TGTCCCTGGTGATGGAAATTACCATATTCAAACTTTACATGAACCAATTG
GCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTGTTCTCTTGTTTACT
TGGAAAGTAGCGCCTGCACTAGCTTGTGGTAATACTATTGTTCTAAAGTC
TGCTGAGCAAACGCCTTTGACTGCTCTGTATTTGGCAAAGCTATTCCATG
AGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCA
ACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTT
TACAGGACACTGTGATACTGGTAAGATTGTTCAGGAATTGGCTGCAAAAA
GCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATA
ATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGC
TTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATG
TACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCT
ATGAGGCGTATTGGTTGGCGATCCCTTCAAGAATGGGGGTGAACAAGTCC
TCAAATTGATCCAGAGCAATTTCAAAA
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