BQ623312

Overview
NameBQ623312
Unique NameBQ623312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:800..1425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_SHEB9 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella baltica (strain OS195) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 66/175 (37.71%), Postives = 92/175 (52.57%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRI 562
            H+P GV     P+NFP  L    + PAL  GNT++ K +E TP  A  +  L+ +AGLP GVLN+V G   T G ALASH  +D L FTG   TG  + +  A    K + LE+GG +P II    D+  AV     + + + GQ C    R YV +    + +    A A+++I
Sbjct:  132 HKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVIFKPSELTPKVAELMVSLWDKAGLPAGVLNLVQGEVDT-GKALASHPQLDGLFFTGSSRTGHFLHQQYAGHPGKILALEMGGNNPLIIKGVQDIKAAVHDILQSAYISSGQRCTCARRLYVEQGEQGDALIAMLAAAVKQI 305          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_SHEB5 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 66/175 (37.71%), Postives = 92/175 (52.57%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRI 562
            H+P GV     P+NFP  L    + PAL  GNT++ K +E TP  A  +  L+ +AGLP GVLN+V G   T G ALASH  +D L FTG   TG  + +  A    K + LE+GG +P II    D+  AV     + + + GQ C    R YV +    + +    A A+++I
Sbjct:  132 HKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVIFKPSELTPKVAELMVSLWDKAGLPAGVLNLVQGEVDT-GKALASHPQLDGLFFTGSSRTGHFLHQQYAGHPGKILALEMGGNNPLIIKGVQDIKAAVHDILQSAYISSGQRCTCARRLYVEQGEQGDALIAMLAAAVKQI 305          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_CITK8 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 63/155 (40.65%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 502
            H P GV     P+NFP  L    + PAL  GNT++ K +E TP T   + KL+ +AGLPPGVLN+V G G   G AL++   +D L FTG  +TG  +    +    K + LE+GG +P II +  D+D AV L   + F   GQ C    R  V
Sbjct:  132 HRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGEAVMKLWQQAGLPPGVLNLVQG-GRETGQALSALDALDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIENPEDIDAAVHLTIQSAFVTAGQRCTCARRLLV 285          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_BURTA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 63/167 (37.72%), Postives = 88/167 (52.69%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 535
            H P GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P ++ +  D+D AV  A  + F + GQ C    R  V    + D FV +
Sbjct:  133 HRPHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGEKDT-GVALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVVAEVEDIDAAVHHAIQSAFLSAGQRCTCARRILVPRGAFGDRFVAR 298          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_BURCH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 63/167 (37.72%), Postives = 89/167 (53.29%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 535
            H P GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + D F+ +
Sbjct:  133 HRPHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGDRFLAR 298          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_BURCC (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 63/167 (37.72%), Postives = 89/167 (53.29%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 535
            H P GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + D F+ +
Sbjct:  133 HRPHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGDRFLAR 298          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_BURCA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 63/167 (37.72%), Postives = 89/167 (53.29%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 535
            H P GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + D F+ +
Sbjct:  133 HRPHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGDRFLAR 298          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ASTD_BURA4 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 62/162 (38.27%), Postives = 86/162 (53.09%), Query Frame = 2
Query:   38 HEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDE 523
            H P GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + E
Sbjct:  133 HRPHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDLDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGE 293          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: IOLA_LISMO (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes GN=iolA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 63/169 (37.28%), Postives = 92/169 (54.44%), Query Frame = 2
Query:   44 PIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARA 550
            P+GV G I P+NFP+++  W    A+A GN+ +LK +E+TPL    L +LF EAGLP GV NVV G        L + + +  +SF G    G+ V +    +NLK V    G K+  I+ +DAD++  V     A F + G+ C A +   V E + DEF+E  +  A
Sbjct:  142 PVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYGAHDVVNGILENEI-IKAVSFVGSKPVGEYVYK-TGSANLKRVQALTGAKNHTIVLNDADLEDTVTNVISAAFGSAGERCMACAVVTVEEGIADEFLEALRTAA 308          
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: IOLA_LISMH (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=iolA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 63/169 (37.28%), Postives = 92/169 (54.44%), Query Frame = 2
Query:   44 PIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARA 550
            P+GV G I P+NFP+++  W    A+A GN+ +LK +E+TPL    L +LF EAGLP GV NVV G        L + + +  +SF G    G+ V +    +NLK V    G K+  I+ +DAD++  V     A F + G+ C A +   V E + DEF+E  +  A
Sbjct:  142 PVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYGAHDVVNGILENEI-IKAVSFVGSKPVGEYVYK-TGSANLKRVQALTGAKNHTIVLNDADLEDTVTNVISAAFGSAGERCMACAVVTVEEDIADEFLEALRTAA 308          
The following BLAST results are available for this feature:
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_SHEB95.917e-2337.71N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHEB55.917e-2337.71N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_CITK85.917e-2340.65N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURTA5.917e-2337.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCH5.917e-2337.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCC5.917e-2337.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCA5.917e-2337.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURA45.917e-2338.27N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA_LISMO7.728e-2337.28Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_LISMH7.728e-2337.28Methylmalonate semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00403 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00403 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623312 ID=BQ623312; Name=BQ623312; organism=Citrus sinensis; type=EST; length=627bp
TGTCCCTGGTGATGGAAATTACCATATTCAAACTTTACATGAACCAATTG
GCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTGTTCTCTTGTTTACT
TGGAAAGTAGCGCCTGCACTAGCTTGTGGTAATACTATTGTTCTAAAGTC
TGCTGAGCAAACGCCTTTGACTGCTCTGTATTTGGCAAAGCTATTCCATG
AGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCA
ACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTT
TACAGGACACTGTGATACTGGTAAGATTGTTCAGGAATTGGCTGCAAAAA
GCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATA
ATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGC
TTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATG
TACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCT
ATGAGGCGTATTGGTTGGCGATCCCTTCAAGAATGGGGGTGAACAAGTCC
TCAAATTGATCCAGAGCAATTTCAAAA
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