BQ623313

Overview
NameBQ623313
Unique NameBQ623313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:571..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 2
Query:   56 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 427
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.042e-15
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 2
Query:   56 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 427
            PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 52/144 (36.11%), Postives = 67/144 (46.53%), Query Frame = 2
Query:   98 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAE 526
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F E
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEE 187          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 50/144 (34.72%), Postives = 68/144 (47.22%), Query Frame = 2
Query:   98 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAE 526
            P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F E
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEE 186          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  350 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAE 526
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAE
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 210          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  350 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAE 526
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAE
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 210          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  350 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAE 526
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAE
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 59          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  350 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAE 526
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAE
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 208          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  350 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAE 526
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAE
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 208          
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.918e-12
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  329 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAE 526
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAE
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAE 67          
The following BLAST results are available for this feature:
BLAST of BQ623313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB12_PETHY3.161e-1537.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC7.042e-1535.48Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC1.017e-1336.11Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU2.265e-1334.72Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2F_SOLLC6.591e-1361.02Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC6.591e-1361.02Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC6.591e-1361.02Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC6.591e-1361.02Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC6.591e-1361.02Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA1.918e-1255.22Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00404 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00404 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623313 ID=BQ623313; Name=BQ623313; organism=Citrus sinensis; type=EST; length=527bp
CCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGT
ACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCA
TCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGG
TTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGA
TCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAA
ATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGC
TGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCA
ACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTG
CTTATGGGTTTTGTTGAAGGATACAGAATTGGGGGCGGGCCTCTTGGTGA
AGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGG
CTGATGACCCCGATCAATTTGCTGAGT
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