BQ623321

Overview
NameBQ623321
Unique NameBQ623321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_DROME (Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.047e-27
Identity = 57/129 (44.19%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   90 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFED 473
            TGTSV+ ++Y  G+++AAD   SYGS  RY+++ER+  + K+ LLG SG+ +D Q + RN+D+ ++ D   DD   + PK L S++TRV+YNRR++ +PL+  +V+GGV N G  YL  V + G ++ED
Sbjct:   56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYED 184          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_ENCCU (Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi GN=PRE4 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 56/152 (36.84%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   84 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK----------NGQKYLGMVSMIGVNFEDSPCCTWVLGIIL 509
            +VTGT+VV+ +Y+DGI+M AD  GSYG   +   V+RI  +G  +LLG SGEISD Q L++ L  L   DN       + PK  H  + R++Y+ R+K  PL  S+ +GG+             +K LG V+ +G  +     CT + G ++
Sbjct:   13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLVKTLTILTQEDN-----RRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLV 159          
The following BLAST results are available for this feature:
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PSB4_DROME6.047e-2744.19Proteasome subunit beta type-4 OS=Drosophila melan... [more]
PSB4_ENCCU3.214e-2036.84Probable proteasome subunit beta type-4 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00412 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00412 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623321 ID=BQ623321; Name=BQ623321; organism=Citrus sinensis; type=EST; length=526bp
CTCAAAACGAATTAATGGAATCGATCCAAGCCAAACAAGGACTTGTCGGC
CCTAACGACCCCATTCAAAGAACCCAGTTACCATATGTGACTGGTACATC
TGTTGTTGCGCTGAAGTACAAAGATGGCATATTAATGGCTGCTGACATGG
GAGGTTCCTATGGGTCAACAATCCGATACAAGAGTGTGGAACGGATTAAA
CCTATTGGAAAGCATTCTCTACTGGGTGCCAGTGGAGAAATAAGTGATTT
TCAGGAGCTTTTGCGTAATCTTGATGAGCTTATACTTTATGACAATATGT
GGGATGATGGGAACTCTTTGGGGCCAAAAGAGTTGCACAGCTATTTGACC
AGGGTCATGTATAACAGGCGTAACAAGTTTGATCCATTGTGGAACTCTCT
TGTGCTTGGTGGAGTGAAAAATGGACAGAAATATCTTGGCATGGTATCAA
TGATAGGAGTGAACTTTGAGGACAGCCCATGTTGCACCTGGGTTTTGGGA
ATCATCTTGCAAGGGCCATTCTTCTG
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